Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0950

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0949 and Psest_0950 are separated by 559 nucleotidesPsest_0950 and Psest_0951 are separated by 181 nucleotides Psest_0949: Psest_0949 - Site-specific recombinase XerD, at 1,027,018 to 1,029,510 _0949 Psest_0950: Psest_0950 - hypothetical protein, at 1,030,070 to 1,030,375 _0950 Psest_0951: Psest_0951 - FAD/FMN-containing dehydrogenases, at 1,030,557 to 1,033,409 _0951 Position (kb) 1030 1031Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1029.239 kb on + strand, within Psest_0949at 1029.239 kb on + strand, within Psest_0949at 1029.239 kb on + strand, within Psest_0949at 1029.239 kb on + strand, within Psest_0949at 1029.239 kb on + strand, within Psest_0949at 1029.240 kb on - strand, within Psest_0949at 1029.240 kb on - strand, within Psest_0949at 1029.389 kb on + strandat 1029.389 kb on + strandat 1029.389 kb on + strandat 1029.392 kb on + strandat 1029.392 kb on + strandat 1029.393 kb on - strandat 1029.416 kb on + strandat 1029.417 kb on - strandat 1029.613 kb on - strandat 1029.849 kb on - strandat 1029.864 kb on + strandat 1030.001 kb on + strandat 1030.215 kb on + strand, within Psest_0950at 1030.215 kb on + strand, within Psest_0950at 1030.216 kb on - strand, within Psest_0950at 1030.216 kb on - strand, within Psest_0950at 1030.216 kb on - strand, within Psest_0950at 1030.216 kb on - strand, within Psest_0950at 1030.216 kb on - strand, within Psest_0950at 1030.216 kb on - strand, within Psest_0950at 1030.216 kb on - strand, within Psest_0950at 1030.558 kb on + strandat 1030.580 kb on + strandat 1030.606 kb on + strandat 1030.607 kb on - strandat 1030.689 kb on + strandat 1030.707 kb on - strandat 1030.925 kb on - strand, within Psest_0951at 1030.951 kb on + strand, within Psest_0951at 1031.017 kb on + strand, within Psest_0951at 1031.017 kb on + strand, within Psest_0951at 1031.018 kb on - strand, within Psest_0951at 1031.099 kb on - strand, within Psest_0951

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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1,029,239 + Psest_0949 0.89 +0.5
1,029,239 + Psest_0949 0.89 -0.4
1,029,239 + Psest_0949 0.89 -2.5
1,029,239 + Psest_0949 0.89 -2.2
1,029,239 + Psest_0949 0.89 -0.1
1,029,240 - Psest_0949 0.89 +1.9
1,029,240 - Psest_0949 0.89 +0.0
1,029,389 + -1.8
1,029,389 + +2.1
1,029,389 + -0.2
1,029,392 + +0.3
1,029,392 + -0.8
1,029,393 - -1.7
1,029,416 + +1.1
1,029,417 - -2.5
1,029,613 - -3.2
1,029,849 - -3.6
1,029,864 + +0.9
1,030,001 + -2.6
1,030,215 + Psest_0950 0.47 +1.2
1,030,215 + Psest_0950 0.47 -2.2
1,030,216 - Psest_0950 0.48 -2.4
1,030,216 - Psest_0950 0.48 -1.4
1,030,216 - Psest_0950 0.48 -2.1
1,030,216 - Psest_0950 0.48 -2.2
1,030,216 - Psest_0950 0.48 -2.5
1,030,216 - Psest_0950 0.48 -0.4
1,030,216 - Psest_0950 0.48 -0.7
1,030,558 + -0.5
1,030,580 + +0.8
1,030,606 + -1.2
1,030,607 - +0.0
1,030,689 + -0.7
1,030,707 - -3.3
1,030,925 - Psest_0951 0.13 +0.3
1,030,951 + Psest_0951 0.14 -3.9
1,031,017 + Psest_0951 0.16 +1.0
1,031,017 + Psest_0951 0.16 -0.6
1,031,018 - Psest_0951 0.16 -0.5
1,031,099 - Psest_0951 0.19 +0.8

Or see this region's nucleotide sequence