Experiment: Furfuryl Alcohol 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0006 and Psest_0007 are separated by 70 nucleotides Psest_0007 and Psest_0008 are separated by 50 nucleotides Psest_0008 and Psest_0009 overlap by 4 nucleotides
Psest_0006: Psest_0006 - alkyl hydroperoxide reductase, F subunit, at 7,009 to 8,571
_0006
Psest_0007: Psest_0007 - diguanylate cyclase (GGDEF) domain, at 8,642 to 10,012
_0007
Psest_0008: Psest_0008 - 1-acyl-sn-glycerol-3-phosphate acyltransferase, at 10,063 to 10,812
_0008
Psest_0009: Psest_0009 - histidinol-phosphate phosphatase family domain/HAD-superfamily hydrolase, subfamily IIIA, at 10,809 to 11,387
_0009
Position (kb)
8
9
10
11 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3
4 at 7.693 kb on + strand, within Psest_0006 at 7.694 kb on - strand, within Psest_0006 at 7.844 kb on - strand, within Psest_0006 at 8.287 kb on + strand, within Psest_0006 at 8.287 kb on + strand, within Psest_0006 at 8.287 kb on + strand, within Psest_0006 at 8.287 kb on + strand, within Psest_0006 at 8.627 kb on + strand at 8.627 kb on + strand at 8.692 kb on - strand at 8.727 kb on + strand at 8.728 kb on - strand at 8.728 kb on - strand at 8.988 kb on + strand, within Psest_0007 at 8.989 kb on - strand, within Psest_0007 at 8.989 kb on - strand, within Psest_0007 at 8.989 kb on - strand, within Psest_0007 at 8.989 kb on - strand, within Psest_0007 at 9.083 kb on + strand, within Psest_0007 at 9.083 kb on + strand, within Psest_0007 at 9.247 kb on + strand, within Psest_0007 at 9.281 kb on + strand, within Psest_0007 at 9.281 kb on + strand, within Psest_0007 at 9.281 kb on + strand, within Psest_0007 at 9.281 kb on + strand, within Psest_0007 at 9.282 kb on - strand, within Psest_0007 at 9.282 kb on - strand, within Psest_0007 at 9.282 kb on - strand, within Psest_0007 at 9.282 kb on - strand, within Psest_0007 at 9.285 kb on + strand, within Psest_0007 at 9.285 kb on + strand, within Psest_0007 at 9.285 kb on + strand, within Psest_0007 at 9.285 kb on + strand, within Psest_0007 at 9.285 kb on + strand, within Psest_0007 at 9.285 kb on + strand, within Psest_0007 at 9.285 kb on + strand, within Psest_0007 at 9.286 kb on - strand, within Psest_0007 at 9.286 kb on - strand, within Psest_0007 at 9.286 kb on - strand, within Psest_0007 at 9.544 kb on - strand, within Psest_0007 at 9.883 kb on - strand at 9.883 kb on - strand at 10.001 kb on + strand at 10.002 kb on - strand at 10.002 kb on - strand at 10.002 kb on - strand at 10.002 kb on - strand at 10.002 kb on - strand at 10.013 kb on - strand at 10.828 kb on - strand at 10.828 kb on - strand at 10.828 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol% remove 7,693 + Psest_0006 0.44 -1.9 7,694 - Psest_0006 0.44 -2.0 7,844 - Psest_0006 0.53 +1.1 8,287 + Psest_0006 0.82 -2.8 8,287 + Psest_0006 0.82 -2.6 8,287 + Psest_0006 0.82 -5.5 8,287 + Psest_0006 0.82 -1.4 8,627 + -0.9 8,627 + -3.3 8,692 - -1.3 8,727 + +0.4 8,728 - -1.2 8,728 - -3.2 8,988 + Psest_0007 0.25 +1.6 8,989 - Psest_0007 0.25 -0.2 8,989 - Psest_0007 0.25 -0.9 8,989 - Psest_0007 0.25 -2.4 8,989 - Psest_0007 0.25 +4.2 9,083 + Psest_0007 0.32 -0.9 9,083 + Psest_0007 0.32 +2.3 9,247 + Psest_0007 0.44 -1.6 9,281 + Psest_0007 0.47 +0.0 9,281 + Psest_0007 0.47 -0.8 9,281 + Psest_0007 0.47 -2.1 9,281 + Psest_0007 0.47 +0.9 9,282 - Psest_0007 0.47 +1.9 9,282 - Psest_0007 0.47 -0.1 9,282 - Psest_0007 0.47 -2.1 9,282 - Psest_0007 0.47 -2.4 9,285 + Psest_0007 0.47 +2.4 9,285 + Psest_0007 0.47 -0.8 9,285 + Psest_0007 0.47 -0.6 9,285 + Psest_0007 0.47 +2.8 9,285 + Psest_0007 0.47 +1.9 9,285 + Psest_0007 0.47 +1.6 9,285 + Psest_0007 0.47 -1.4 9,286 - Psest_0007 0.47 -1.6 9,286 - Psest_0007 0.47 +0.7 9,286 - Psest_0007 0.47 +1.3 9,544 - Psest_0007 0.66 -1.2 9,883 - +1.7 9,883 - +3.0 10,001 + -1.9 10,002 - +0.4 10,002 - -0.4 10,002 - -0.7 10,002 - -3.2 10,002 - -1.1 10,013 - +2.1 10,828 - +2.9 10,828 - +1.5 10,828 - -0.4
Or see this region's nucleotide sequence