Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_p187g155 and HP15_p187g156 are separated by 137 nucleotides HP15_p187g156 and HP15_p187g157 are separated by 142 nucleotides HP15_p187g157 and HP15_p187g158 are separated by 231 nucleotides
HP15_p187g155: HP15_p187g155 - amidohydrolase, at 155,938 to 157,410
_p187g155
HP15_p187g156: HP15_p187g156 - lipoprotein, at 157,548 to 158,072
_p187g156
HP15_p187g157: HP15_p187g157 - fatty acid desaturase, at 158,215 to 159,114
_p187g157
HP15_p187g158: HP15_p187g158 - alpha/beta hydrolase fold protein, at 159,346 to 160,383
_p187g158
Position (kb) 158
159
160 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 157.221 kb on + strand, within HP15_p187g155 at 157.221 kb on + strand, within HP15_p187g155 at 157.221 kb on + strand, within HP15_p187g155 at 157.221 kb on + strand, within HP15_p187g155 at 157.229 kb on - strand, within HP15_p187g155 at 157.231 kb on + strand, within HP15_p187g155 at 157.238 kb on + strand, within HP15_p187g155 at 157.319 kb on - strand at 157.352 kb on - strand at 157.376 kb on + strand at 157.384 kb on - strand at 157.385 kb on - strand at 157.386 kb on - strand at 157.391 kb on + strand at 157.499 kb on + strand at 157.499 kb on + strand at 157.505 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.507 kb on - strand at 157.521 kb on - strand at 157.543 kb on + strand at 157.583 kb on + strand at 157.615 kb on + strand, within HP15_p187g156 at 157.615 kb on + strand, within HP15_p187g156 at 157.639 kb on + strand, within HP15_p187g156 at 157.639 kb on + strand, within HP15_p187g156 at 157.639 kb on + strand, within HP15_p187g156 at 157.639 kb on + strand, within HP15_p187g156 at 157.647 kb on - strand, within HP15_p187g156 at 157.649 kb on + strand, within HP15_p187g156 at 157.684 kb on - strand, within HP15_p187g156 at 157.690 kb on + strand, within HP15_p187g156 at 157.744 kb on + strand, within HP15_p187g156 at 157.752 kb on - strand, within HP15_p187g156 at 157.777 kb on + strand, within HP15_p187g156 at 157.796 kb on + strand, within HP15_p187g156 at 157.806 kb on + strand, within HP15_p187g156 at 157.806 kb on + strand, within HP15_p187g156 at 157.806 kb on + strand, within HP15_p187g156 at 157.806 kb on + strand, within HP15_p187g156 at 157.806 kb on + strand, within HP15_p187g156 at 157.811 kb on + strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.814 kb on - strand, within HP15_p187g156 at 157.819 kb on - strand, within HP15_p187g156 at 157.819 kb on - strand, within HP15_p187g156 at 157.827 kb on - strand, within HP15_p187g156 at 157.859 kb on + strand, within HP15_p187g156 at 157.889 kb on + strand, within HP15_p187g156 at 157.899 kb on + strand, within HP15_p187g156 at 157.899 kb on + strand, within HP15_p187g156 at 158.019 kb on + strand, within HP15_p187g156 at 158.021 kb on + strand at 158.029 kb on + strand at 158.039 kb on - strand at 158.059 kb on - strand at 158.086 kb on + strand at 158.094 kb on - strand at 158.105 kb on - strand at 158.166 kb on - strand at 158.227 kb on + strand at 158.254 kb on - strand at 158.271 kb on - strand at 158.300 kb on - strand at 158.302 kb on + strand at 158.311 kb on + strand, within HP15_p187g157 at 158.319 kb on - strand, within HP15_p187g157 at 158.319 kb on - strand, within HP15_p187g157 at 158.319 kb on - strand, within HP15_p187g157 at 158.321 kb on + strand, within HP15_p187g157 at 158.321 kb on + strand, within HP15_p187g157 at 158.329 kb on - strand, within HP15_p187g157 at 158.329 kb on - strand, within HP15_p187g157 at 158.365 kb on + strand, within HP15_p187g157 at 158.391 kb on - strand, within HP15_p187g157 at 158.398 kb on + strand, within HP15_p187g157 at 158.398 kb on + strand, within HP15_p187g157 at 158.406 kb on - strand, within HP15_p187g157 at 158.411 kb on - strand, within HP15_p187g157 at 158.420 kb on - strand, within HP15_p187g157 at 158.435 kb on - strand, within HP15_p187g157 at 158.435 kb on - strand, within HP15_p187g157 at 158.452 kb on - strand, within HP15_p187g157 at 158.468 kb on + strand, within HP15_p187g157 at 158.485 kb on - strand, within HP15_p187g157 at 158.486 kb on - strand, within HP15_p187g157 at 158.507 kb on - strand, within HP15_p187g157 at 158.509 kb on + strand, within HP15_p187g157 at 158.517 kb on - strand, within HP15_p187g157 at 158.521 kb on + strand, within HP15_p187g157 at 158.521 kb on + strand, within HP15_p187g157 at 158.523 kb on + strand, within HP15_p187g157 at 158.523 kb on + strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.531 kb on - strand, within HP15_p187g157 at 158.571 kb on - strand, within HP15_p187g157 at 158.644 kb on + strand, within HP15_p187g157 at 158.723 kb on - strand, within HP15_p187g157 at 158.835 kb on + strand, within HP15_p187g157 at 158.841 kb on - strand, within HP15_p187g157 at 158.911 kb on - strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.946 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.951 kb on + strand, within HP15_p187g157 at 158.954 kb on - strand, within HP15_p187g157 at 158.954 kb on - strand, within HP15_p187g157 at 158.959 kb on - strand, within HP15_p187g157 at 158.959 kb on - strand, within HP15_p187g157 at 158.990 kb on - strand, within HP15_p187g157 at 159.021 kb on + strand, within HP15_p187g157 at 159.021 kb on + strand, within HP15_p187g157 at 159.029 kb on - strand at 159.029 kb on - strand at 159.030 kb on - strand at 159.049 kb on + strand at 159.049 kb on + strand at 159.057 kb on - strand at 159.091 kb on + strand at 159.120 kb on + strand at 159.125 kb on + strand at 159.126 kb on + strand at 159.153 kb on + strand at 159.161 kb on - strand at 159.161 kb on - strand at 159.162 kb on + strand at 159.163 kb on + strand at 159.170 kb on - strand at 159.179 kb on - strand at 159.181 kb on + strand at 159.189 kb on - strand at 159.201 kb on - strand at 159.210 kb on - strand at 159.224 kb on - strand at 159.226 kb on + strand at 159.266 kb on + strand at 159.268 kb on + strand at 159.274 kb on - strand at 159.274 kb on - strand at 159.276 kb on - strand at 159.284 kb on - strand at 159.286 kb on + strand at 159.435 kb on + strand at 159.438 kb on + strand at 159.438 kb on + strand at 159.441 kb on - strand at 159.441 kb on - strand at 159.443 kb on + strand at 159.451 kb on - strand, within HP15_p187g158 at 159.487 kb on - strand, within HP15_p187g158 at 159.501 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.507 kb on + strand, within HP15_p187g158 at 159.509 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.515 kb on - strand, within HP15_p187g158 at 159.530 kb on + strand, within HP15_p187g158 at 159.538 kb on - strand, within HP15_p187g158 at 159.670 kb on + strand, within HP15_p187g158 at 159.670 kb on + strand, within HP15_p187g158 at 159.677 kb on - strand, within HP15_p187g158 at 159.730 kb on + strand, within HP15_p187g158 at 159.730 kb on - strand, within HP15_p187g158 at 159.748 kb on - strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.812 kb on + strand, within HP15_p187g158 at 159.814 kb on + strand, within HP15_p187g158 at 159.832 kb on + strand, within HP15_p187g158 at 159.906 kb on + strand, within HP15_p187g158 at 159.906 kb on + strand, within HP15_p187g158 at 159.909 kb on - strand, within HP15_p187g158 at 159.914 kb on - strand, within HP15_p187g158 at 159.944 kb on + strand, within HP15_p187g158 at 159.996 kb on + strand, within HP15_p187g158 at 159.996 kb on + strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.004 kb on - strand, within HP15_p187g158 at 160.012 kb on + strand, within HP15_p187g158 at 160.066 kb on + strand, within HP15_p187g158 at 160.067 kb on - strand, within HP15_p187g158 at 160.114 kb on + strand, within HP15_p187g158
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 157,221 + HP15_p187g155 0.87 -0.3 157,221 + HP15_p187g155 0.87 +0.5 157,221 + HP15_p187g155 0.87 -0.4 157,221 + HP15_p187g155 0.87 +0.8 157,229 - HP15_p187g155 0.88 +2.5 157,231 + HP15_p187g155 0.88 +0.1 157,238 + HP15_p187g155 0.88 -0.8 157,319 - +2.0 157,352 - -0.7 157,376 + -0.0 157,384 - +1.6 157,385 - +0.5 157,386 - -0.5 157,391 + -0.6 157,499 + -0.7 157,499 + +0.0 157,505 - +1.8 157,507 - -0.7 157,507 - +1.5 157,507 - -0.3 157,521 - +1.6 157,543 + -1.1 157,583 + -0.4 157,615 + HP15_p187g156 0.13 +1.9 157,615 + HP15_p187g156 0.13 -1.1 157,639 + HP15_p187g156 0.17 +0.2 157,639 + HP15_p187g156 0.17 -0.6 157,639 + HP15_p187g156 0.17 +0.5 157,639 + HP15_p187g156 0.17 +0.8 157,647 - HP15_p187g156 0.19 +0.1 157,649 + HP15_p187g156 0.19 +1.1 157,684 - HP15_p187g156 0.26 -0.5 157,690 + HP15_p187g156 0.27 -0.7 157,744 + HP15_p187g156 0.37 -0.5 157,752 - HP15_p187g156 0.39 -0.2 157,777 + HP15_p187g156 0.44 -0.4 157,796 + HP15_p187g156 0.47 +1.2 157,806 + HP15_p187g156 0.49 -0.1 157,806 + HP15_p187g156 0.49 -1.0 157,806 + HP15_p187g156 0.49 +2.0 157,806 + HP15_p187g156 0.49 +2.3 157,806 + HP15_p187g156 0.49 +1.7 157,811 + HP15_p187g156 0.50 +0.6 157,814 - HP15_p187g156 0.51 -0.2 157,814 - HP15_p187g156 0.51 +1.4 157,814 - HP15_p187g156 0.51 -0.9 157,814 - HP15_p187g156 0.51 +1.9 157,814 - HP15_p187g156 0.51 +0.4 157,814 - HP15_p187g156 0.51 -0.7 157,814 - HP15_p187g156 0.51 +1.3 157,819 - HP15_p187g156 0.52 -0.4 157,819 - HP15_p187g156 0.52 -0.2 157,827 - HP15_p187g156 0.53 -2.3 157,859 + HP15_p187g156 0.59 +1.9 157,889 + HP15_p187g156 0.65 -1.3 157,899 + HP15_p187g156 0.67 -0.1 157,899 + HP15_p187g156 0.67 -0.3 158,019 + HP15_p187g156 0.90 +0.2 158,021 + -0.8 158,029 + +2.0 158,039 - +1.7 158,059 - -2.2 158,086 + +1.3 158,094 - -0.5 158,105 - +0.5 158,166 - -0.1 158,227 + +1.8 158,254 - +0.0 158,271 - -0.6 158,300 - +1.5 158,302 + -0.9 158,311 + HP15_p187g157 0.11 -0.2 158,319 - HP15_p187g157 0.12 +1.8 158,319 - HP15_p187g157 0.12 -0.4 158,319 - HP15_p187g157 0.12 +1.6 158,321 + HP15_p187g157 0.12 -0.4 158,321 + HP15_p187g157 0.12 +1.7 158,329 - HP15_p187g157 0.13 -1.0 158,329 - HP15_p187g157 0.13 +2.1 158,365 + HP15_p187g157 0.17 +1.8 158,391 - HP15_p187g157 0.20 +2.4 158,398 + HP15_p187g157 0.20 -2.3 158,398 + HP15_p187g157 0.20 +0.0 158,406 - HP15_p187g157 0.21 -0.6 158,411 - HP15_p187g157 0.22 +1.6 158,420 - HP15_p187g157 0.23 +1.3 158,435 - HP15_p187g157 0.24 -1.0 158,435 - HP15_p187g157 0.24 -0.4 158,452 - HP15_p187g157 0.26 +0.4 158,468 + HP15_p187g157 0.28 -0.3 158,485 - HP15_p187g157 0.30 +1.8 158,486 - HP15_p187g157 0.30 -0.4 158,507 - HP15_p187g157 0.32 +2.0 158,509 + HP15_p187g157 0.33 -0.6 158,517 - HP15_p187g157 0.34 -0.5 158,521 + HP15_p187g157 0.34 +2.1 158,521 + HP15_p187g157 0.34 -0.4 158,523 + HP15_p187g157 0.34 -1.1 158,523 + HP15_p187g157 0.34 -0.2 158,531 - HP15_p187g157 0.35 -0.5 158,531 - HP15_p187g157 0.35 +1.7 158,531 - HP15_p187g157 0.35 +0.6 158,571 - HP15_p187g157 0.40 +1.5 158,644 + HP15_p187g157 0.48 -0.4 158,723 - HP15_p187g157 0.56 +0.4 158,835 + HP15_p187g157 0.69 -0.1 158,841 - HP15_p187g157 0.70 -1.0 158,911 - HP15_p187g157 0.77 +2.4 158,946 + HP15_p187g157 0.81 +1.8 158,946 + HP15_p187g157 0.81 +1.5 158,946 + HP15_p187g157 0.81 -0.7 158,946 + HP15_p187g157 0.81 -0.3 158,946 + HP15_p187g157 0.81 +1.7 158,951 + HP15_p187g157 0.82 +2.9 158,951 + HP15_p187g157 0.82 -0.1 158,951 + HP15_p187g157 0.82 +0.9 158,954 - HP15_p187g157 0.82 +1.8 158,954 - HP15_p187g157 0.82 -0.4 158,959 - HP15_p187g157 0.83 +0.6 158,959 - HP15_p187g157 0.83 -1.8 158,990 - HP15_p187g157 0.86 -0.7 159,021 + HP15_p187g157 0.90 -0.4 159,021 + HP15_p187g157 0.90 +0.2 159,029 - +1.1 159,029 - +1.5 159,030 - +0.2 159,049 + +1.5 159,049 + -1.0 159,057 - +2.9 159,091 + +2.2 159,120 + -0.3 159,125 + -0.0 159,126 + +1.7 159,153 + +0.6 159,161 - -0.7 159,161 - -0.2 159,162 + -0.5 159,163 + +1.7 159,170 - +0.6 159,179 - -0.7 159,181 + -0.9 159,189 - -0.4 159,201 - -0.8 159,210 - -0.6 159,224 - +1.8 159,226 + +1.5 159,266 + +1.7 159,268 + +0.7 159,274 - -0.4 159,274 - -0.5 159,276 - -0.4 159,284 - -1.1 159,286 + +0.4 159,435 + +1.7 159,438 + -0.9 159,438 + -0.1 159,441 - -0.9 159,441 - -0.3 159,443 + -0.3 159,451 - HP15_p187g158 0.10 +1.2 159,487 - HP15_p187g158 0.14 +1.9 159,501 + HP15_p187g158 0.15 -0.3 159,507 + HP15_p187g158 0.16 +2.0 159,507 + HP15_p187g158 0.16 -0.3 159,507 + HP15_p187g158 0.16 -1.1 159,507 + HP15_p187g158 0.16 -0.8 159,507 + HP15_p187g158 0.16 -0.7 159,507 + HP15_p187g158 0.16 +0.1 159,509 - HP15_p187g158 0.16 -1.5 159,515 - HP15_p187g158 0.16 +1.6 159,515 - HP15_p187g158 0.16 +1.5 159,515 - HP15_p187g158 0.16 +1.6 159,530 + HP15_p187g158 0.18 +1.7 159,538 - HP15_p187g158 0.18 +1.9 159,670 + HP15_p187g158 0.31 +0.4 159,670 + HP15_p187g158 0.31 -0.8 159,677 - HP15_p187g158 0.32 +0.6 159,730 + HP15_p187g158 0.37 +0.9 159,730 - HP15_p187g158 0.37 -1.4 159,748 - HP15_p187g158 0.39 -0.1 159,812 + HP15_p187g158 0.45 -0.6 159,812 + HP15_p187g158 0.45 +1.4 159,812 + HP15_p187g158 0.45 +1.3 159,814 + HP15_p187g158 0.45 -0.5 159,832 + HP15_p187g158 0.47 +1.5 159,906 + HP15_p187g158 0.54 -0.7 159,906 + HP15_p187g158 0.54 -0.4 159,909 - HP15_p187g158 0.54 -0.6 159,914 - HP15_p187g158 0.55 +0.1 159,944 + HP15_p187g158 0.58 -0.6 159,996 + HP15_p187g158 0.63 +2.3 159,996 + HP15_p187g158 0.63 -0.3 160,004 - HP15_p187g158 0.63 -0.5 160,004 - HP15_p187g158 0.63 +0.6 160,004 - HP15_p187g158 0.63 -0.3 160,012 + HP15_p187g158 0.64 +2.2 160,066 + HP15_p187g158 0.69 -0.8 160,067 - HP15_p187g158 0.69 -0.1 160,114 + HP15_p187g158 0.74 +0.9
Or see this region's nucleotide sequence