Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4322

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4320 and Psest_4321 overlap by 4 nucleotidesPsest_4321 and Psest_4322 are separated by 5 nucleotidesPsest_4322 and Psest_4323 are separated by 155 nucleotides Psest_4320: Psest_4320 - Zn-dependent oligopeptidases, at 4,519,470 to 4,521,521 _4320 Psest_4321: Psest_4321 - conserved hypothetical metal-binding protein, at 4,521,518 to 4,521,796 _4321 Psest_4322: Psest_4322 - Domain of unknown function (DUF1835)./Protein of unknown function., at 4,521,802 to 4,522,578 _4322 Psest_4323: Psest_4323 - Predicted acyltransferases, at 4,522,734 to 4,523,804 _4323 Position (kb) 4521 4522 4523Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 4521.240 kb on + strand, within Psest_4320at 4521.298 kb on - strand, within Psest_4320at 4521.300 kb on + strand, within Psest_4320at 4521.300 kb on + strand, within Psest_4320at 4521.300 kb on + strand, within Psest_4320at 4521.301 kb on - strand, within Psest_4320at 4521.301 kb on - strand, within Psest_4320at 4521.301 kb on - strand, within Psest_4320at 4521.301 kb on - strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.306 kb on + strand, within Psest_4320at 4521.307 kb on - strand, within Psest_4320at 4521.307 kb on - strand, within Psest_4320at 4521.307 kb on - strand, within Psest_4320at 4521.307 kb on - strand, within Psest_4320at 4521.307 kb on - strand, within Psest_4320at 4521.307 kb on - strand, within Psest_4320at 4521.307 kb on - strand, within Psest_4320at 4521.307 kb on - strand, within Psest_4320at 4521.437 kb on - strandat 4521.437 kb on - strandat 4521.531 kb on + strandat 4521.795 kb on - strandat 4521.902 kb on + strand, within Psest_4322at 4522.104 kb on - strand, within Psest_4322at 4522.104 kb on - strand, within Psest_4322at 4522.104 kb on - strand, within Psest_4322at 4522.104 kb on - strand, within Psest_4322at 4522.104 kb on - strand, within Psest_4322at 4522.240 kb on + strand, within Psest_4322at 4522.240 kb on + strand, within Psest_4322at 4522.240 kb on + strand, within Psest_4322at 4522.240 kb on + strand, within Psest_4322at 4522.240 kb on + strand, within Psest_4322at 4522.240 kb on + strand, within Psest_4322at 4522.240 kb on + strand, within Psest_4322at 4522.241 kb on - strand, within Psest_4322at 4522.241 kb on - strand, within Psest_4322at 4522.241 kb on - strand, within Psest_4322at 4522.241 kb on - strand, within Psest_4322at 4522.241 kb on - strand, within Psest_4322at 4522.243 kb on - strand, within Psest_4322at 4522.243 kb on - strand, within Psest_4322at 4522.255 kb on - strand, within Psest_4322at 4522.255 kb on - strand, within Psest_4322at 4522.255 kb on - strand, within Psest_4322at 4522.523 kb on + strandat 4522.524 kb on - strandat 4522.906 kb on + strand, within Psest_4323at 4522.907 kb on - strand, within Psest_4323at 4522.907 kb on - strand, within Psest_4323at 4522.907 kb on - strand, within Psest_4323at 4522.907 kb on - strand, within Psest_4323at 4522.936 kb on + strand, within Psest_4323at 4522.936 kb on + strand, within Psest_4323at 4522.936 kb on + strand, within Psest_4323at 4522.936 kb on + strand, within Psest_4323at 4522.936 kb on + strand, within Psest_4323at 4522.937 kb on - strand, within Psest_4323at 4522.937 kb on - strand, within Psest_4323at 4522.937 kb on - strand, within Psest_4323at 4522.942 kb on + strand, within Psest_4323at 4522.942 kb on + strand, within Psest_4323at 4522.942 kb on + strand, within Psest_4323at 4522.942 kb on + strand, within Psest_4323at 4522.943 kb on - strand, within Psest_4323at 4522.943 kb on - strand, within Psest_4323at 4522.951 kb on + strand, within Psest_4323at 4522.966 kb on + strand, within Psest_4323at 4522.966 kb on + strand, within Psest_4323at 4522.967 kb on - strand, within Psest_4323at 4523.011 kb on + strand, within Psest_4323at 4523.012 kb on - strand, within Psest_4323at 4523.023 kb on + strand, within Psest_4323at 4523.024 kb on - strand, within Psest_4323at 4523.041 kb on + strand, within Psest_4323at 4523.042 kb on - strand, within Psest_4323at 4523.042 kb on - strand, within Psest_4323at 4523.158 kb on + strand, within Psest_4323at 4523.158 kb on + strand, within Psest_4323at 4523.158 kb on + strand, within Psest_4323at 4523.159 kb on - strand, within Psest_4323at 4523.161 kb on + strand, within Psest_4323at 4523.161 kb on + strand, within Psest_4323at 4523.161 kb on + strand, within Psest_4323at 4523.197 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.317 kb on + strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.318 kb on - strand, within Psest_4323at 4523.371 kb on + strand, within Psest_4323at 4523.372 kb on - strand, within Psest_4323at 4523.434 kb on + strand, within Psest_4323at 4523.435 kb on - strand, within Psest_4323at 4523.435 kb on - strand, within Psest_4323at 4523.435 kb on - strand, within Psest_4323at 4523.435 kb on - strand, within Psest_4323at 4523.559 kb on + strand, within Psest_4323

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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4,521,240 + Psest_4320 0.86 -0.4
4,521,298 - Psest_4320 0.89 -0.2
4,521,300 + Psest_4320 0.89 -1.9
4,521,300 + Psest_4320 0.89 +2.7
4,521,300 + Psest_4320 0.89 -1.7
4,521,301 - Psest_4320 0.89 -1.1
4,521,301 - Psest_4320 0.89 -0.1
4,521,301 - Psest_4320 0.89 +0.9
4,521,301 - Psest_4320 0.89 -2.4
4,521,306 + Psest_4320 0.89 -2.9
4,521,306 + Psest_4320 0.89 -1.3
4,521,306 + Psest_4320 0.89 -0.0
4,521,306 + Psest_4320 0.89 -0.4
4,521,306 + Psest_4320 0.89 -2.5
4,521,306 + Psest_4320 0.89 +0.2
4,521,306 + Psest_4320 0.89 -1.9
4,521,306 + Psest_4320 0.89 +3.6
4,521,306 + Psest_4320 0.89 +0.1
4,521,306 + Psest_4320 0.89 -0.9
4,521,306 + Psest_4320 0.89 -1.9
4,521,306 + Psest_4320 0.89 -0.9
4,521,306 + Psest_4320 0.89 -2.1
4,521,307 - Psest_4320 0.90 +0.9
4,521,307 - Psest_4320 0.90 -0.1
4,521,307 - Psest_4320 0.90 -0.7
4,521,307 - Psest_4320 0.90 -0.8
4,521,307 - Psest_4320 0.90 +3.5
4,521,307 - Psest_4320 0.90 +2.3
4,521,307 - Psest_4320 0.90 +1.9
4,521,307 - Psest_4320 0.90 -0.4
4,521,437 - -1.1
4,521,437 - -2.8
4,521,531 + -1.1
4,521,795 - -0.4
4,521,902 + Psest_4322 0.13 +0.8
4,522,104 - Psest_4322 0.39 -0.4
4,522,104 - Psest_4322 0.39 +0.2
4,522,104 - Psest_4322 0.39 -1.4
4,522,104 - Psest_4322 0.39 -1.3
4,522,104 - Psest_4322 0.39 -0.7
4,522,240 + Psest_4322 0.56 -1.5
4,522,240 + Psest_4322 0.56 +5.6
4,522,240 + Psest_4322 0.56 -0.4
4,522,240 + Psest_4322 0.56 -1.4
4,522,240 + Psest_4322 0.56 -1.3
4,522,240 + Psest_4322 0.56 -1.7
4,522,240 + Psest_4322 0.56 -0.9
4,522,241 - Psest_4322 0.56 +0.6
4,522,241 - Psest_4322 0.56 -1.3
4,522,241 - Psest_4322 0.56 +0.7
4,522,241 - Psest_4322 0.56 +0.9
4,522,241 - Psest_4322 0.56 +0.2
4,522,243 - Psest_4322 0.57 -1.9
4,522,243 - Psest_4322 0.57 +1.3
4,522,255 - Psest_4322 0.58 -0.3
4,522,255 - Psest_4322 0.58 -1.1
4,522,255 - Psest_4322 0.58 -1.6
4,522,523 + -3.4
4,522,524 - -1.4
4,522,906 + Psest_4323 0.16 +1.5
4,522,907 - Psest_4323 0.16 +1.6
4,522,907 - Psest_4323 0.16 -2.2
4,522,907 - Psest_4323 0.16 -0.4
4,522,907 - Psest_4323 0.16 +2.2
4,522,936 + Psest_4323 0.19 -1.9
4,522,936 + Psest_4323 0.19 -0.7
4,522,936 + Psest_4323 0.19 +1.1
4,522,936 + Psest_4323 0.19 -2.0
4,522,936 + Psest_4323 0.19 -0.9
4,522,937 - Psest_4323 0.19 -1.1
4,522,937 - Psest_4323 0.19 -1.0
4,522,937 - Psest_4323 0.19 -2.4
4,522,942 + Psest_4323 0.19 +0.9
4,522,942 + Psest_4323 0.19 -2.1
4,522,942 + Psest_4323 0.19 -1.5
4,522,942 + Psest_4323 0.19 +1.6
4,522,943 - Psest_4323 0.20 -1.5
4,522,943 - Psest_4323 0.20 -0.7
4,522,951 + Psest_4323 0.20 -1.4
4,522,966 + Psest_4323 0.22 -1.8
4,522,966 + Psest_4323 0.22 -0.5
4,522,967 - Psest_4323 0.22 -1.1
4,523,011 + Psest_4323 0.26 -0.7
4,523,012 - Psest_4323 0.26 -1.1
4,523,023 + Psest_4323 0.27 +0.3
4,523,024 - Psest_4323 0.27 -0.9
4,523,041 + Psest_4323 0.29 +0.1
4,523,042 - Psest_4323 0.29 +0.9
4,523,042 - Psest_4323 0.29 -0.4
4,523,158 + Psest_4323 0.40 -0.7
4,523,158 + Psest_4323 0.40 -1.5
4,523,158 + Psest_4323 0.40 +2.1
4,523,159 - Psest_4323 0.40 +0.3
4,523,161 + Psest_4323 0.40 +1.3
4,523,161 + Psest_4323 0.40 -0.3
4,523,161 + Psest_4323 0.40 +2.0
4,523,197 + Psest_4323 0.43 +0.1
4,523,317 + Psest_4323 0.54 -0.1
4,523,317 + Psest_4323 0.54 -0.1
4,523,317 + Psest_4323 0.54 +0.1
4,523,317 + Psest_4323 0.54 -0.7
4,523,317 + Psest_4323 0.54 -0.3
4,523,317 + Psest_4323 0.54 -0.1
4,523,317 + Psest_4323 0.54 -0.2
4,523,317 + Psest_4323 0.54 -1.1
4,523,317 + Psest_4323 0.54 -0.4
4,523,317 + Psest_4323 0.54 +1.9
4,523,317 + Psest_4323 0.54 +0.3
4,523,317 + Psest_4323 0.54 +0.2
4,523,318 - Psest_4323 0.55 +1.9
4,523,318 - Psest_4323 0.55 +1.5
4,523,318 - Psest_4323 0.55 -0.1
4,523,318 - Psest_4323 0.55 -1.4
4,523,318 - Psest_4323 0.55 -1.3
4,523,318 - Psest_4323 0.55 -2.0
4,523,318 - Psest_4323 0.55 +1.6
4,523,318 - Psest_4323 0.55 -0.9
4,523,318 - Psest_4323 0.55 -1.3
4,523,318 - Psest_4323 0.55 -1.4
4,523,318 - Psest_4323 0.55 +1.2
4,523,318 - Psest_4323 0.55 +0.6
4,523,318 - Psest_4323 0.55 +0.6
4,523,318 - Psest_4323 0.55 -0.7
4,523,318 - Psest_4323 0.55 -0.7
4,523,318 - Psest_4323 0.55 +1.6
4,523,318 - Psest_4323 0.55 +1.3
4,523,318 - Psest_4323 0.55 -2.8
4,523,318 - Psest_4323 0.55 -0.3
4,523,371 + Psest_4323 0.59 +0.7
4,523,372 - Psest_4323 0.60 +2.6
4,523,434 + Psest_4323 0.65 -0.2
4,523,435 - Psest_4323 0.65 +0.2
4,523,435 - Psest_4323 0.65 +0.4
4,523,435 - Psest_4323 0.65 -1.8
4,523,435 - Psest_4323 0.65 -0.3
4,523,559 + Psest_4323 0.77 +1.1

Or see this region's nucleotide sequence