Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4077

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4075 and Psest_4076 are separated by 9 nucleotidesPsest_4076 and Psest_4077 are separated by 169 nucleotidesPsest_4077 and Psest_4078 are separated by 100 nucleotides Psest_4075: Psest_4075 - symporter for L-glutamate, L-glutamine, and L-proline (from data), at 4,250,321 to 4,251,580 _4075 Psest_4076: Psest_4076 - hypothetical protein, at 4,251,590 to 4,252,408 _4076 Psest_4077: Psest_4077 - amino acid carrier protein, at 4,252,578 to 4,253,999 _4077 Psest_4078: Psest_4078 - L-asparaginase/archaeal Glu-tRNAGln amidotransferase subunit D, at 4,254,100 to 4,255,083 _4078 Position (kb) 4252 4253 4254Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 4251.679 kb on - strand, within Psest_4076at 4251.679 kb on - strand, within Psest_4076at 4251.679 kb on - strand, within Psest_4076at 4251.679 kb on - strand, within Psest_4076at 4251.730 kb on - strand, within Psest_4076at 4251.730 kb on - strand, within Psest_4076at 4251.730 kb on - strand, within Psest_4076at 4251.790 kb on + strand, within Psest_4076at 4251.790 kb on + strand, within Psest_4076at 4251.873 kb on + strand, within Psest_4076at 4251.999 kb on + strand, within Psest_4076at 4251.999 kb on + strand, within Psest_4076at 4251.999 kb on + strand, within Psest_4076at 4251.999 kb on + strand, within Psest_4076at 4252.000 kb on - strand, within Psest_4076at 4252.071 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.080 kb on + strand, within Psest_4076at 4252.081 kb on - strand, within Psest_4076at 4252.081 kb on - strand, within Psest_4076at 4252.081 kb on - strand, within Psest_4076at 4252.302 kb on + strand, within Psest_4076at 4252.302 kb on + strand, within Psest_4076at 4252.302 kb on + strand, within Psest_4076at 4252.303 kb on - strand, within Psest_4076at 4252.303 kb on - strand, within Psest_4076at 4252.303 kb on - strand, within Psest_4076at 4252.303 kb on - strand, within Psest_4076at 4252.490 kb on - strandat 4252.887 kb on + strand, within Psest_4077at 4252.887 kb on + strand, within Psest_4077at 4252.887 kb on + strand, within Psest_4077at 4252.887 kb on + strand, within Psest_4077at 4252.887 kb on + strand, within Psest_4077at 4252.888 kb on - strand, within Psest_4077at 4252.888 kb on - strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.914 kb on + strand, within Psest_4077at 4252.915 kb on - strand, within Psest_4077at 4252.915 kb on - strand, within Psest_4077at 4252.962 kb on + strand, within Psest_4077at 4252.962 kb on + strand, within Psest_4077at 4252.962 kb on + strand, within Psest_4077at 4252.962 kb on + strand, within Psest_4077at 4252.962 kb on + strand, within Psest_4077at 4252.963 kb on - strand, within Psest_4077at 4253.212 kb on - strand, within Psest_4077at 4253.520 kb on + strand, within Psest_4077at 4253.521 kb on - strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.646 kb on + strand, within Psest_4077at 4253.647 kb on - strand, within Psest_4077at 4253.647 kb on - strand, within Psest_4077at 4253.647 kb on - strand, within Psest_4077at 4253.647 kb on - strand, within Psest_4077at 4253.652 kb on + strand, within Psest_4077at 4253.652 kb on + strand, within Psest_4077at 4253.652 kb on + strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.653 kb on - strand, within Psest_4077at 4253.655 kb on + strand, within Psest_4077at 4253.655 kb on + strand, within Psest_4077at 4253.656 kb on - strand, within Psest_4077at 4253.656 kb on - strand, within Psest_4077at 4253.656 kb on - strand, within Psest_4077at 4253.656 kb on - strand, within Psest_4077at 4253.712 kb on + strand, within Psest_4077at 4253.712 kb on + strand, within Psest_4077at 4253.713 kb on - strand, within Psest_4077at 4253.713 kb on - strand, within Psest_4077at 4253.868 kb on + strandat 4253.869 kb on - strandat 4254.040 kb on - strandat 4254.093 kb on + strandat 4254.093 kb on + strandat 4254.134 kb on - strandat 4254.394 kb on + strand, within Psest_4078at 4254.794 kb on - strand, within Psest_4078at 4254.918 kb on - strand, within Psest_4078at 4254.919 kb on + strand, within Psest_4078at 4254.920 kb on - strand, within Psest_4078at 4254.920 kb on - strand, within Psest_4078

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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4,251,679 - Psest_4076 0.11 +4.1
4,251,679 - Psest_4076 0.11 +2.6
4,251,679 - Psest_4076 0.11 +2.3
4,251,679 - Psest_4076 0.11 +0.2
4,251,730 - Psest_4076 0.17 +3.2
4,251,730 - Psest_4076 0.17 +3.4
4,251,730 - Psest_4076 0.17 +0.0
4,251,790 + Psest_4076 0.24 +2.9
4,251,790 + Psest_4076 0.24 +2.2
4,251,873 + Psest_4076 0.35 +1.1
4,251,999 + Psest_4076 0.50 +2.1
4,251,999 + Psest_4076 0.50 +1.4
4,251,999 + Psest_4076 0.50 +1.2
4,251,999 + Psest_4076 0.50 +5.0
4,252,000 - Psest_4076 0.50 +2.4
4,252,071 + Psest_4076 0.59 +2.4
4,252,080 + Psest_4076 0.60 +0.7
4,252,080 + Psest_4076 0.60 -0.3
4,252,080 + Psest_4076 0.60 +0.0
4,252,080 + Psest_4076 0.60 +1.5
4,252,080 + Psest_4076 0.60 +1.2
4,252,080 + Psest_4076 0.60 +3.2
4,252,080 + Psest_4076 0.60 +1.8
4,252,081 - Psest_4076 0.60 +3.3
4,252,081 - Psest_4076 0.60 +2.3
4,252,081 - Psest_4076 0.60 +2.1
4,252,302 + Psest_4076 0.87 +3.1
4,252,302 + Psest_4076 0.87 +2.1
4,252,302 + Psest_4076 0.87 +2.0
4,252,303 - Psest_4076 0.87 +1.7
4,252,303 - Psest_4076 0.87 -0.4
4,252,303 - Psest_4076 0.87 +0.7
4,252,303 - Psest_4076 0.87 +3.4
4,252,490 - +2.8
4,252,887 + Psest_4077 0.22 +2.8
4,252,887 + Psest_4077 0.22 +1.5
4,252,887 + Psest_4077 0.22 +1.8
4,252,887 + Psest_4077 0.22 +1.6
4,252,887 + Psest_4077 0.22 +2.8
4,252,888 - Psest_4077 0.22 +3.4
4,252,888 - Psest_4077 0.22 +1.2
4,252,914 + Psest_4077 0.24 +1.8
4,252,914 + Psest_4077 0.24 +2.0
4,252,914 + Psest_4077 0.24 +1.5
4,252,914 + Psest_4077 0.24 +1.7
4,252,914 + Psest_4077 0.24 -1.0
4,252,914 + Psest_4077 0.24 +2.7
4,252,914 + Psest_4077 0.24 +0.8
4,252,914 + Psest_4077 0.24 +1.2
4,252,915 - Psest_4077 0.24 +0.2
4,252,915 - Psest_4077 0.24 +2.9
4,252,962 + Psest_4077 0.27 +0.8
4,252,962 + Psest_4077 0.27 +2.1
4,252,962 + Psest_4077 0.27 +3.0
4,252,962 + Psest_4077 0.27 +1.5
4,252,962 + Psest_4077 0.27 +1.5
4,252,963 - Psest_4077 0.27 +0.8
4,253,212 - Psest_4077 0.45 +1.1
4,253,520 + Psest_4077 0.66 +1.5
4,253,521 - Psest_4077 0.66 +0.8
4,253,646 + Psest_4077 0.75 +2.2
4,253,646 + Psest_4077 0.75 +1.3
4,253,646 + Psest_4077 0.75 -0.5
4,253,646 + Psest_4077 0.75 +0.9
4,253,646 + Psest_4077 0.75 +1.4
4,253,646 + Psest_4077 0.75 +2.1
4,253,646 + Psest_4077 0.75 +1.0
4,253,646 + Psest_4077 0.75 +0.8
4,253,647 - Psest_4077 0.75 -0.2
4,253,647 - Psest_4077 0.75 +1.1
4,253,647 - Psest_4077 0.75 +4.1
4,253,647 - Psest_4077 0.75 +0.6
4,253,652 + Psest_4077 0.76 +1.0
4,253,652 + Psest_4077 0.76 +0.7
4,253,652 + Psest_4077 0.76 +2.3
4,253,653 - Psest_4077 0.76 +1.9
4,253,653 - Psest_4077 0.76 +0.9
4,253,653 - Psest_4077 0.76 +0.6
4,253,653 - Psest_4077 0.76 +3.9
4,253,653 - Psest_4077 0.76 +1.8
4,253,653 - Psest_4077 0.76 +0.2
4,253,653 - Psest_4077 0.76 +1.2
4,253,653 - Psest_4077 0.76 +1.1
4,253,653 - Psest_4077 0.76 +1.0
4,253,655 + Psest_4077 0.76 +1.4
4,253,655 + Psest_4077 0.76 +1.8
4,253,656 - Psest_4077 0.76 +1.3
4,253,656 - Psest_4077 0.76 +0.1
4,253,656 - Psest_4077 0.76 +3.8
4,253,656 - Psest_4077 0.76 +5.4
4,253,712 + Psest_4077 0.80 +1.1
4,253,712 + Psest_4077 0.80 +1.6
4,253,713 - Psest_4077 0.80 +0.1
4,253,713 - Psest_4077 0.80 +0.8
4,253,868 + +3.1
4,253,869 - +0.2
4,254,040 - -0.6
4,254,093 + +0.2
4,254,093 + +1.8
4,254,134 - -0.2
4,254,394 + Psest_4078 0.30 -0.5
4,254,794 - Psest_4078 0.71 +0.7
4,254,918 - Psest_4078 0.83 +0.8
4,254,919 + Psest_4078 0.83 -0.5
4,254,920 - Psest_4078 0.83 +0.8
4,254,920 - Psest_4078 0.83 +2.8

Or see this region's nucleotide sequence