Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0388

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0387 and Psest_0388 are separated by 188 nucleotidesPsest_0388 and Psest_0389 overlap by 1 nucleotidesPsest_0389 and Psest_0390 are separated by 5 nucleotides Psest_0387: Psest_0387 - Membrane-bound serine protease (ClpP class), at 416,085 to 417,464 _0387 Psest_0388: Psest_0388 - hypothetical protein, at 417,653 to 417,778 _0388 Psest_0389: Psest_0389 - hypothetical protein, at 417,778 to 417,975 _0389 Psest_0390: Psest_0390 - Short-chain dehydrogenases of various substrate specificities, at 417,981 to 418,973 _0390 Position (kb) 417 418Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 416.665 kb on + strand, within Psest_0387at 416.665 kb on + strand, within Psest_0387at 416.665 kb on + strand, within Psest_0387at 416.665 kb on + strand, within Psest_0387at 416.727 kb on + strand, within Psest_0387at 416.728 kb on - strand, within Psest_0387at 416.854 kb on + strand, within Psest_0387at 416.968 kb on + strand, within Psest_0387at 416.968 kb on + strand, within Psest_0387at 416.968 kb on + strand, within Psest_0387at 416.968 kb on + strand, within Psest_0387at 416.969 kb on - strand, within Psest_0387at 416.969 kb on - strand, within Psest_0387at 416.969 kb on - strand, within Psest_0387at 417.072 kb on - strand, within Psest_0387at 417.145 kb on + strand, within Psest_0387at 417.146 kb on - strand, within Psest_0387at 417.146 kb on - strand, within Psest_0387at 417.146 kb on - strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.154 kb on + strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.155 kb on - strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.196 kb on + strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.197 kb on - strand, within Psest_0387at 417.333 kb on + strandat 417.333 kb on + strandat 417.333 kb on + strandat 417.333 kb on + strandat 417.333 kb on + strandat 417.333 kb on + strandat 417.333 kb on + strandat 417.333 kb on + strandat 417.333 kb on + strandat 417.334 kb on - strandat 417.334 kb on - strandat 417.334 kb on - strandat 417.334 kb on - strandat 417.334 kb on - strandat 417.334 kb on - strandat 417.334 kb on - strandat 417.334 kb on - strandat 417.334 kb on - strandat 417.334 kb on - strandat 417.337 kb on + strandat 417.337 kb on + strandat 417.337 kb on + strandat 417.337 kb on + strandat 417.337 kb on + strandat 417.338 kb on - strandat 417.338 kb on - strandat 417.338 kb on - strandat 417.338 kb on - strandat 417.446 kb on + strandat 417.446 kb on + strandat 417.446 kb on + strandat 417.519 kb on - strandat 417.519 kb on - strandat 417.886 kb on + strand, within Psest_0389at 417.886 kb on + strand, within Psest_0389at 417.886 kb on + strand, within Psest_0389at 417.886 kb on + strand, within Psest_0389at 417.886 kb on + strand, within Psest_0389at 417.886 kb on + strand, within Psest_0389at 417.887 kb on - strand, within Psest_0389at 417.887 kb on - strand, within Psest_0389at 417.887 kb on - strand, within Psest_0389at 418.639 kb on + strand, within Psest_0390at 418.639 kb on + strand, within Psest_0390at 418.640 kb on - strand, within Psest_0390at 418.640 kb on - strand, within Psest_0390

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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416,665 + Psest_0387 0.42 -1.9
416,665 + Psest_0387 0.42 -0.7
416,665 + Psest_0387 0.42 -0.1
416,665 + Psest_0387 0.42 +1.3
416,727 + Psest_0387 0.47 +0.1
416,728 - Psest_0387 0.47 -1.2
416,854 + Psest_0387 0.56 +0.7
416,968 + Psest_0387 0.64 -0.3
416,968 + Psest_0387 0.64 +2.7
416,968 + Psest_0387 0.64 -0.8
416,968 + Psest_0387 0.64 +0.3
416,969 - Psest_0387 0.64 +1.7
416,969 - Psest_0387 0.64 +1.2
416,969 - Psest_0387 0.64 +0.7
417,072 - Psest_0387 0.72 -0.9
417,145 + Psest_0387 0.77 +1.7
417,146 - Psest_0387 0.77 +0.3
417,146 - Psest_0387 0.77 +2.1
417,146 - Psest_0387 0.77 +0.1
417,154 + Psest_0387 0.77 -1.9
417,154 + Psest_0387 0.77 -1.5
417,154 + Psest_0387 0.77 -0.2
417,154 + Psest_0387 0.77 +0.7
417,154 + Psest_0387 0.77 +3.0
417,154 + Psest_0387 0.77 +0.1
417,154 + Psest_0387 0.77 +0.7
417,154 + Psest_0387 0.77 +1.7
417,154 + Psest_0387 0.77 +0.7
417,154 + Psest_0387 0.77 +2.7
417,154 + Psest_0387 0.77 -0.3
417,154 + Psest_0387 0.77 -0.3
417,154 + Psest_0387 0.77 -0.7
417,155 - Psest_0387 0.78 -1.3
417,155 - Psest_0387 0.78 +0.7
417,155 - Psest_0387 0.78 +1.7
417,155 - Psest_0387 0.78 +0.8
417,155 - Psest_0387 0.78 +0.7
417,155 - Psest_0387 0.78 +3.7
417,155 - Psest_0387 0.78 -0.3
417,155 - Psest_0387 0.78 -1.9
417,155 - Psest_0387 0.78 +0.7
417,155 - Psest_0387 0.78 -1.1
417,155 - Psest_0387 0.78 -0.7
417,155 - Psest_0387 0.78 -1.5
417,155 - Psest_0387 0.78 +2.5
417,196 + Psest_0387 0.81 +0.1
417,196 + Psest_0387 0.81 -0.7
417,196 + Psest_0387 0.81 +0.7
417,196 + Psest_0387 0.81 +0.1
417,196 + Psest_0387 0.81 +4.0
417,196 + Psest_0387 0.81 -1.5
417,196 + Psest_0387 0.81 +0.7
417,196 + Psest_0387 0.81 +0.1
417,196 + Psest_0387 0.81 -0.3
417,196 + Psest_0387 0.81 +0.1
417,196 + Psest_0387 0.81 +1.7
417,196 + Psest_0387 0.81 -0.9
417,196 + Psest_0387 0.81 +0.1
417,196 + Psest_0387 0.81 -0.3
417,196 + Psest_0387 0.81 +0.1
417,196 + Psest_0387 0.81 +0.7
417,196 + Psest_0387 0.81 +0.9
417,196 + Psest_0387 0.81 +1.4
417,196 + Psest_0387 0.81 +1.7
417,196 + Psest_0387 0.81 +0.7
417,196 + Psest_0387 0.81 -1.1
417,197 - Psest_0387 0.81 +1.9
417,197 - Psest_0387 0.81 -0.3
417,197 - Psest_0387 0.81 -0.3
417,197 - Psest_0387 0.81 -0.3
417,197 - Psest_0387 0.81 -1.8
417,197 - Psest_0387 0.81 +0.4
417,197 - Psest_0387 0.81 +0.7
417,197 - Psest_0387 0.81 -1.9
417,197 - Psest_0387 0.81 +0.1
417,197 - Psest_0387 0.81 +0.7
417,197 - Psest_0387 0.81 -0.8
417,197 - Psest_0387 0.81 -1.1
417,197 - Psest_0387 0.81 +0.3
417,197 - Psest_0387 0.81 -0.7
417,197 - Psest_0387 0.81 -0.2
417,333 + +0.1
417,333 + +0.7
417,333 + -0.8
417,333 + +0.7
417,333 + +0.7
417,333 + +2.7
417,333 + +0.7
417,333 + +0.1
417,333 + +0.1
417,334 - -0.5
417,334 - +1.2
417,334 - -0.7
417,334 - -0.9
417,334 - -2.2
417,334 - +1.7
417,334 - -0.0
417,334 - +1.3
417,334 - +0.1
417,334 - +1.1
417,337 + +2.7
417,337 + +0.7
417,337 + +0.4
417,337 + -0.1
417,337 + +0.7
417,338 - -1.9
417,338 - +3.0
417,338 - -0.1
417,338 - +0.1
417,446 + +2.7
417,446 + +0.2
417,446 + -0.7
417,519 - +1.7
417,519 - -1.1
417,886 + Psest_0389 0.55 +1.7
417,886 + Psest_0389 0.55 -0.7
417,886 + Psest_0389 0.55 +1.7
417,886 + Psest_0389 0.55 -0.3
417,886 + Psest_0389 0.55 +0.7
417,886 + Psest_0389 0.55 -0.3
417,887 - Psest_0389 0.55 +1.7
417,887 - Psest_0389 0.55 -1.8
417,887 - Psest_0389 0.55 -1.3
418,639 + Psest_0390 0.66 +0.1
418,639 + Psest_0390 0.66 +0.5
418,640 - Psest_0390 0.66 +0.1
418,640 - Psest_0390 0.66 +1.7

Or see this region's nucleotide sequence