Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01710 and PGA1_262p01720 are separated by 12 nucleotides PGA1_262p01720 and PGA1_262p01730 overlap by 4 nucleotides PGA1_262p01730 and PGA1_262p01740 overlap by 4 nucleotides PGA1_262p01740 and PGA1_262p01750 are separated by 11 nucleotides
PGA1_262p01710: PGA1_262p01710 - putative glutathione transport system permease protein, at 188,005 to 188,943
_262p01710
PGA1_262p01720: PGA1_262p01720 - putative glutathione transport system permease protein, at 188,956 to 189,834
_262p01720
PGA1_262p01730: PGA1_262p01730 - putative glutathione import ATP-binding protein, at 189,831 to 190,808
_262p01730
PGA1_262p01740: PGA1_262p01740 - putative peptide ABC transporter, ATP-binding protein, at 190,805 to 191,734
_262p01740
PGA1_262p01750: PGA1_262p01750 - putative amidohydrolase, at 191,746 to 193,389
_262p01750
Position (kb) 189
190
191 Strain fitness (log2 ratio) -2
-1
0
1 at 188.980 kb on + strand at 188.988 kb on - strand at 189.046 kb on + strand, within PGA1_262p01720 at 189.046 kb on + strand, within PGA1_262p01720 at 189.095 kb on + strand, within PGA1_262p01720 at 189.173 kb on - strand, within PGA1_262p01720 at 189.361 kb on + strand, within PGA1_262p01720 at 189.393 kb on + strand, within PGA1_262p01720 at 189.474 kb on + strand, within PGA1_262p01720 at 189.474 kb on + strand, within PGA1_262p01720 at 189.476 kb on + strand, within PGA1_262p01720 at 189.476 kb on + strand, within PGA1_262p01720 at 189.476 kb on + strand, within PGA1_262p01720 at 189.482 kb on - strand, within PGA1_262p01720 at 189.482 kb on - strand, within PGA1_262p01720 at 189.494 kb on - strand, within PGA1_262p01720 at 189.540 kb on + strand, within PGA1_262p01720 at 189.540 kb on + strand, within PGA1_262p01720 at 189.586 kb on + strand, within PGA1_262p01720 at 189.647 kb on + strand, within PGA1_262p01720 at 189.685 kb on - strand, within PGA1_262p01720 at 189.695 kb on - strand, within PGA1_262p01720 at 189.698 kb on + strand, within PGA1_262p01720 at 189.825 kb on + strand at 189.835 kb on + strand at 189.893 kb on + strand at 189.899 kb on - strand at 189.899 kb on - strand at 189.940 kb on - strand, within PGA1_262p01730 at 189.976 kb on - strand, within PGA1_262p01730 at 189.981 kb on - strand, within PGA1_262p01730 at 190.051 kb on - strand, within PGA1_262p01730 at 190.107 kb on - strand, within PGA1_262p01730 at 190.243 kb on - strand, within PGA1_262p01730 at 190.311 kb on - strand, within PGA1_262p01730 at 190.340 kb on - strand, within PGA1_262p01730 at 190.389 kb on - strand, within PGA1_262p01730 at 190.471 kb on + strand, within PGA1_262p01730 at 190.471 kb on + strand, within PGA1_262p01730 at 190.506 kb on + strand, within PGA1_262p01730 at 190.574 kb on + strand, within PGA1_262p01730 at 190.611 kb on - strand, within PGA1_262p01730 at 190.613 kb on + strand, within PGA1_262p01730 at 190.620 kb on - strand, within PGA1_262p01730 at 190.729 kb on + strand at 190.737 kb on - strand at 190.781 kb on + strand at 190.809 kb on + strand at 190.849 kb on - strand at 190.900 kb on - strand, within PGA1_262p01740 at 190.900 kb on - strand, within PGA1_262p01740 at 190.900 kb on - strand, within PGA1_262p01740 at 190.912 kb on - strand, within PGA1_262p01740 at 190.968 kb on - strand, within PGA1_262p01740 at 191.139 kb on + strand, within PGA1_262p01740 at 191.231 kb on - strand, within PGA1_262p01740 at 191.261 kb on - strand, within PGA1_262p01740 at 191.266 kb on - strand, within PGA1_262p01740 at 191.323 kb on + strand, within PGA1_262p01740 at 191.323 kb on + strand, within PGA1_262p01740 at 191.327 kb on - strand, within PGA1_262p01740 at 191.375 kb on + strand, within PGA1_262p01740 at 191.410 kb on + strand, within PGA1_262p01740 at 191.418 kb on - strand, within PGA1_262p01740 at 191.457 kb on - strand, within PGA1_262p01740 at 191.520 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.601 kb on + strand, within PGA1_262p01740 at 191.609 kb on - strand, within PGA1_262p01740 at 191.671 kb on + strand at 191.744 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 188,980 + +1.1 188,988 - -1.3 189,046 + PGA1_262p01720 0.10 +1.1 189,046 + PGA1_262p01720 0.10 +0.2 189,095 + PGA1_262p01720 0.16 +0.4 189,173 - PGA1_262p01720 0.25 +1.2 189,361 + PGA1_262p01720 0.46 +0.9 189,393 + PGA1_262p01720 0.50 +0.2 189,474 + PGA1_262p01720 0.59 -0.4 189,474 + PGA1_262p01720 0.59 +0.2 189,476 + PGA1_262p01720 0.59 -0.4 189,476 + PGA1_262p01720 0.59 +0.4 189,476 + PGA1_262p01720 0.59 -0.7 189,482 - PGA1_262p01720 0.60 +1.2 189,482 - PGA1_262p01720 0.60 -1.7 189,494 - PGA1_262p01720 0.61 +0.9 189,540 + PGA1_262p01720 0.66 -0.5 189,540 + PGA1_262p01720 0.66 -0.6 189,586 + PGA1_262p01720 0.72 +0.8 189,647 + PGA1_262p01720 0.79 -0.7 189,685 - PGA1_262p01720 0.83 +0.5 189,695 - PGA1_262p01720 0.84 -0.4 189,698 + PGA1_262p01720 0.84 +0.3 189,825 + -0.1 189,835 + -0.4 189,893 + +0.1 189,899 - +0.3 189,899 - -0.3 189,940 - PGA1_262p01730 0.11 +0.6 189,976 - PGA1_262p01730 0.15 -0.1 189,981 - PGA1_262p01730 0.15 -0.7 190,051 - PGA1_262p01730 0.22 -0.0 190,107 - PGA1_262p01730 0.28 +0.6 190,243 - PGA1_262p01730 0.42 -1.0 190,311 - PGA1_262p01730 0.49 -0.4 190,340 - PGA1_262p01730 0.52 +0.7 190,389 - PGA1_262p01730 0.57 +0.1 190,471 + PGA1_262p01730 0.65 -0.6 190,471 + PGA1_262p01730 0.65 +0.2 190,506 + PGA1_262p01730 0.69 +0.8 190,574 + PGA1_262p01730 0.76 -0.0 190,611 - PGA1_262p01730 0.80 -0.2 190,613 + PGA1_262p01730 0.80 -1.6 190,620 - PGA1_262p01730 0.81 +0.1 190,729 + -1.9 190,737 - -0.3 190,781 + +0.4 190,809 + +0.6 190,849 - -0.4 190,900 - PGA1_262p01740 0.10 -0.0 190,900 - PGA1_262p01740 0.10 +1.1 190,900 - PGA1_262p01740 0.10 -0.1 190,912 - PGA1_262p01740 0.12 +0.2 190,968 - PGA1_262p01740 0.18 -0.9 191,139 + PGA1_262p01740 0.36 -1.3 191,231 - PGA1_262p01740 0.46 -1.2 191,261 - PGA1_262p01740 0.49 -1.1 191,266 - PGA1_262p01740 0.50 -1.4 191,323 + PGA1_262p01740 0.56 +0.1 191,323 + PGA1_262p01740 0.56 +0.9 191,327 - PGA1_262p01740 0.56 -0.6 191,375 + PGA1_262p01740 0.61 +0.2 191,410 + PGA1_262p01740 0.65 -1.3 191,418 - PGA1_262p01740 0.66 +0.1 191,457 - PGA1_262p01740 0.70 -1.4 191,520 + PGA1_262p01740 0.77 +0.3 191,601 + PGA1_262p01740 0.86 -0.4 191,601 + PGA1_262p01740 0.86 -1.4 191,601 + PGA1_262p01740 0.86 -0.3 191,609 - PGA1_262p01740 0.86 +0.7 191,671 + -0.4 191,744 - +0.4
Or see this region's nucleotide sequence