Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3668

Experiment: Furfuryl Alcohol 0.05 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3667 and Psest_3668 are separated by 114 nucleotidesPsest_3668 and Psest_3669 are separated by 33 nucleotidesPsest_3669 and Psest_3670 overlap by 4 nucleotides Psest_3667: Psest_3667 - 4-hydroxythreonine-4-phosphate dehydrogenase, at 3,831,510 to 3,832,502 _3667 Psest_3668: Psest_3668 - dimethyladenosine transferase, at 3,832,617 to 3,833,411 _3668 Psest_3669: Psest_3669 - Uncharacterized protein affecting Mg2+/Co2+ transport, at 3,833,445 to 3,833,828 _3669 Psest_3670: Psest_3670 - bis(5'-nucleosyl)-tetraphosphatase (symmetrical), at 3,833,825 to 3,834,652 _3670 Position (kb) 3832 3833 3834Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3832.551 kb on - strandat 3832.551 kb on - strandat 3832.555 kb on + strandat 3832.950 kb on + strand, within Psest_3668at 3833.405 kb on + strandat 3833.405 kb on + strandat 3833.405 kb on + strandat 3833.406 kb on - strandat 3833.406 kb on - strandat 3833.406 kb on - strandat 3833.410 kb on - strandat 3833.456 kb on + strandat 3833.456 kb on + strandat 3833.457 kb on - strandat 3833.457 kb on - strandat 3833.463 kb on + strandat 3833.463 kb on + strandat 3833.530 kb on - strand, within Psest_3669at 3833.541 kb on + strand, within Psest_3669at 3833.541 kb on + strand, within Psest_3669at 3833.542 kb on - strand, within Psest_3669at 3833.694 kb on + strand, within Psest_3669at 3833.695 kb on - strand, within Psest_3669at 3833.695 kb on - strand, within Psest_3669at 3833.695 kb on - strand, within Psest_3669at 3833.696 kb on + strand, within Psest_3669at 3833.696 kb on + strand, within Psest_3669at 3833.696 kb on + strand, within Psest_3669at 3833.745 kb on + strand, within Psest_3669at 3833.834 kb on + strandat 3833.834 kb on + strandat 3833.834 kb on + strandat 3833.834 kb on + strandat 3833.834 kb on + strandat 3833.834 kb on + strandat 3833.834 kb on + strandat 3833.835 kb on - strandat 3833.835 kb on - strandat 3833.835 kb on - strandat 3833.919 kb on + strand, within Psest_3670at 3833.920 kb on - strand, within Psest_3670at 3833.920 kb on - strand, within Psest_3670at 3834.152 kb on + strand, within Psest_3670at 3834.152 kb on + strand, within Psest_3670at 3834.252 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.293 kb on + strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.294 kb on - strand, within Psest_3670at 3834.362 kb on + strand, within Psest_3670at 3834.362 kb on + strand, within Psest_3670at 3834.362 kb on + strand, within Psest_3670at 3834.362 kb on + strand, within Psest_3670at 3834.362 kb on + strand, within Psest_3670at 3834.362 kb on + strand, within Psest_3670at 3834.362 kb on + strand, within Psest_3670at 3834.362 kb on + strand, within Psest_3670at 3834.362 kb on + strand, within Psest_3670at 3834.363 kb on - strand, within Psest_3670at 3834.363 kb on - strand, within Psest_3670at 3834.363 kb on - strand, within Psest_3670at 3834.363 kb on - strand, within Psest_3670at 3834.363 kb on - strand, within Psest_3670at 3834.373 kb on + strand, within Psest_3670at 3834.373 kb on + strand, within Psest_3670at 3834.374 kb on - strand, within Psest_3670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
remove
3,832,551 - -1.6
3,832,551 - -0.1
3,832,555 + -0.9
3,832,950 + Psest_3668 0.42 -0.6
3,833,405 + -2.1
3,833,405 + -0.1
3,833,405 + -0.2
3,833,406 - -1.2
3,833,406 - +0.1
3,833,406 - -0.7
3,833,410 - -0.2
3,833,456 + -0.7
3,833,456 + -1.7
3,833,457 - -1.1
3,833,457 - -0.4
3,833,463 + +0.8
3,833,463 + +0.8
3,833,530 - Psest_3669 0.22 -0.2
3,833,541 + Psest_3669 0.25 +1.2
3,833,541 + Psest_3669 0.25 -0.2
3,833,542 - Psest_3669 0.25 +0.2
3,833,694 + Psest_3669 0.65 -0.4
3,833,695 - Psest_3669 0.65 +0.5
3,833,695 - Psest_3669 0.65 -1.4
3,833,695 - Psest_3669 0.65 +0.2
3,833,696 + Psest_3669 0.65 +1.2
3,833,696 + Psest_3669 0.65 +0.2
3,833,696 + Psest_3669 0.65 +0.7
3,833,745 + Psest_3669 0.78 +0.7
3,833,834 + +1.2
3,833,834 + +1.1
3,833,834 + +3.5
3,833,834 + +0.4
3,833,834 + +1.0
3,833,834 + +2.2
3,833,834 + +1.5
3,833,835 - +2.9
3,833,835 - +0.4
3,833,835 - +1.8
3,833,919 + Psest_3670 0.11 +1.8
3,833,920 - Psest_3670 0.11 +2.3
3,833,920 - Psest_3670 0.11 +0.2
3,834,152 + Psest_3670 0.39 +2.4
3,834,152 + Psest_3670 0.39 +2.5
3,834,252 + Psest_3670 0.52 +2.0
3,834,293 + Psest_3670 0.57 +2.0
3,834,293 + Psest_3670 0.57 +2.2
3,834,293 + Psest_3670 0.57 +2.5
3,834,293 + Psest_3670 0.57 +2.5
3,834,293 + Psest_3670 0.57 +0.8
3,834,293 + Psest_3670 0.57 +1.3
3,834,293 + Psest_3670 0.57 +2.1
3,834,293 + Psest_3670 0.57 +1.5
3,834,293 + Psest_3670 0.57 +3.2
3,834,293 + Psest_3670 0.57 +2.9
3,834,293 + Psest_3670 0.57 +2.7
3,834,293 + Psest_3670 0.57 +0.2
3,834,293 + Psest_3670 0.57 +1.5
3,834,293 + Psest_3670 0.57 +2.7
3,834,293 + Psest_3670 0.57 +0.9
3,834,294 - Psest_3670 0.57 +0.7
3,834,294 - Psest_3670 0.57 +2.1
3,834,294 - Psest_3670 0.57 +0.4
3,834,294 - Psest_3670 0.57 +1.0
3,834,294 - Psest_3670 0.57 +1.5
3,834,294 - Psest_3670 0.57 +1.8
3,834,294 - Psest_3670 0.57 +2.4
3,834,294 - Psest_3670 0.57 +2.2
3,834,294 - Psest_3670 0.57 +1.5
3,834,294 - Psest_3670 0.57 +3.0
3,834,294 - Psest_3670 0.57 +2.4
3,834,294 - Psest_3670 0.57 +2.8
3,834,294 - Psest_3670 0.57 -0.8
3,834,294 - Psest_3670 0.57 +3.6
3,834,362 + Psest_3670 0.65 +3.5
3,834,362 + Psest_3670 0.65 +3.0
3,834,362 + Psest_3670 0.65 +3.1
3,834,362 + Psest_3670 0.65 +2.3
3,834,362 + Psest_3670 0.65 +2.8
3,834,362 + Psest_3670 0.65 +2.5
3,834,362 + Psest_3670 0.65 +2.0
3,834,362 + Psest_3670 0.65 +2.1
3,834,362 + Psest_3670 0.65 +1.5
3,834,363 - Psest_3670 0.65 +1.8
3,834,363 - Psest_3670 0.65 +2.2
3,834,363 - Psest_3670 0.65 +1.3
3,834,363 - Psest_3670 0.65 +1.4
3,834,363 - Psest_3670 0.65 +1.3
3,834,373 + Psest_3670 0.66 +2.8
3,834,373 + Psest_3670 0.66 +2.5
3,834,374 - Psest_3670 0.66 +1.2

Or see this region's nucleotide sequence