Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c35550

Experiment: D-Xylose (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Xylose (C)
3,725,464	+		PGA1_c35540	0.40	+0.1
3,725,481	+		PGA1_c35540	0.41	+1.2
3,725,489	-		PGA1_c35540	0.42	+0.5
3,725,528	+		PGA1_c35540	0.44	-0.4
3,725,531	-		PGA1_c35540	0.44	-0.5
3,725,548	+		PGA1_c35540	0.45	+0.1
3,725,548	+		PGA1_c35540	0.45	-0.6
3,725,556	-		PGA1_c35540	0.46	-1.9
3,725,619	+		PGA1_c35540	0.50	+0.1
3,725,679	+		PGA1_c35540	0.54	-0.5
3,725,679	+		PGA1_c35540	0.54	-0.8
3,725,679	+		PGA1_c35540	0.54	-2.0
3,725,679	+		PGA1_c35540	0.54	-0.8
3,725,687	-		PGA1_c35540	0.54	-0.9
3,725,733	-		PGA1_c35540	0.57	-0.6
3,725,768	-		PGA1_c35540	0.59	+1.5
3,725,862	-		PGA1_c35540	0.65	-1.2
3,725,896	-		PGA1_c35540	0.67	+0.5
3,725,899	-		PGA1_c35540	0.67	-0.2
3,725,964	-		PGA1_c35540	0.71	-2.0
3,726,007	+		PGA1_c35540	0.74	+1.9
3,726,007	+		PGA1_c35540	0.74	+1.0
3,726,010	-		PGA1_c35540	0.74	-0.9
3,726,017	+		PGA1_c35540	0.74	-0.4
3,726,024	+		PGA1_c35540	0.75	-0.5
3,726,054	+		PGA1_c35540	0.77	+0.0
3,726,087	+		PGA1_c35540	0.79	-0.8
3,726,087	+		PGA1_c35540	0.79	-0.1
3,726,087	+		PGA1_c35540	0.79	+0.4
3,726,087	+		PGA1_c35540	0.79	-1.1
3,726,087	+		PGA1_c35540	0.79	-1.5
3,726,087	+		PGA1_c35540	0.79	-0.8
3,726,087	+		PGA1_c35540	0.79	-0.0
3,726,087	+		PGA1_c35540	0.79	-0.2
3,726,087	+		PGA1_c35540	0.79	-0.5
3,726,087	+		PGA1_c35540	0.79	+0.4
3,726,087	+		PGA1_c35540	0.79	-1.2
3,726,087	+		PGA1_c35540	0.79	+0.0
3,726,087	+		PGA1_c35540	0.79	-0.5
3,726,087	+		PGA1_c35540	0.79	-0.5
3,726,087	+		PGA1_c35540	0.79	-0.5
3,726,087	+		PGA1_c35540	0.79	-0.5
3,726,087	+		PGA1_c35540	0.79	+0.8
3,726,095	-		PGA1_c35540	0.79	+0.1
3,726,095	-		PGA1_c35540	0.79	-0.8
3,726,095	-		PGA1_c35540	0.79	+0.8
3,726,095	-		PGA1_c35540	0.79	-1.1
3,726,095	-		PGA1_c35540	0.79	-0.8
3,726,095	-		PGA1_c35540	0.79	+0.6
3,726,095	-		PGA1_c35540	0.79	-1.4
3,726,095	-		PGA1_c35540	0.79	+0.5
3,726,095	-		PGA1_c35540	0.79	-1.1
3,726,095	-		PGA1_c35540	0.79	+0.3
3,726,095	-		PGA1_c35540	0.79	-0.5
3,726,095	-		PGA1_c35540	0.79	-0.5
3,726,095	-		PGA1_c35540	0.79	-0.5
3,726,187	+		PGA1_c35540	0.85	+0.2
3,726,195	-		PGA1_c35540	0.85	+0.6
3,726,196	-		PGA1_c35540	0.86	-0.3
3,726,250	-		PGA1_c35540	0.89	-0.5
3,726,250	-		PGA1_c35540	0.89	-0.1
3,726,250	-		PGA1_c35540	0.89	+0.4
3,726,307	-				+1.0
3,726,308	+				-0.9
3,726,308	+				+0.2
3,726,316	-				+0.2
3,726,339	-				+0.4
3,726,479	+				-1.4
3,726,481	+				-0.5
3,726,516	-				-0.4
3,726,525	+				-0.1
3,726,525	+				-0.1
3,726,533	-				+0.5
3,726,546	-				-1.0
3,726,561	+				-2.2
3,726,569	+				-0.5
3,726,582	-				-0.3
3,726,634	-		PGA1_c35550	0.11	+0.3
3,726,634	-		PGA1_c35550	0.11	-2.0
3,726,636	-		PGA1_c35550	0.11	-0.5
3,726,636	-		PGA1_c35550	0.11	-0.4
3,726,750	+		PGA1_c35550	0.18	+0.1
3,726,758	-		PGA1_c35550	0.19	-0.5
3,726,845	+		PGA1_c35550	0.24	+0.0
3,726,845	+		PGA1_c35550	0.24	+1.2
3,726,847	+		PGA1_c35550	0.24	-1.0
3,726,847	+		PGA1_c35550	0.24	-1.4
3,726,847	+		PGA1_c35550	0.24	+0.4
3,726,847	+		PGA1_c35550	0.24	-0.3
3,726,847	+		PGA1_c35550	0.24	+0.2
3,726,847	+		PGA1_c35550	0.24	-1.7
3,726,847	+		PGA1_c35550	0.24	-0.5
3,726,847	+		PGA1_c35550	0.24	-0.1
3,726,853	-		PGA1_c35550	0.25	+0.6
3,726,855	-		PGA1_c35550	0.25	-0.9
3,726,855	-		PGA1_c35550	0.25	-0.6
3,726,855	-		PGA1_c35550	0.25	-1.4
3,726,855	-		PGA1_c35550	0.25	-1.7
3,726,855	-		PGA1_c35550	0.25	-0.3
3,726,855	-		PGA1_c35550	0.25	-0.5
3,726,855	-		PGA1_c35550	0.25	+0.8
3,726,855	-		PGA1_c35550	0.25	-0.6
3,726,857	+		PGA1_c35550	0.25	-0.8
3,726,862	+		PGA1_c35550	0.25	-1.4
3,726,907	+		PGA1_c35550	0.28	-0.3
3,726,907	+		PGA1_c35550	0.28	+0.0
3,726,907	+		PGA1_c35550	0.28	+0.9
3,726,907	+		PGA1_c35550	0.28	-0.0
3,726,922	+		PGA1_c35550	0.29	-0.1
3,726,956	+		PGA1_c35550	0.31	+1.3
3,726,956	+		PGA1_c35550	0.31	+0.2
3,726,956	+		PGA1_c35550	0.31	-0.1
3,726,956	+		PGA1_c35550	0.31	-1.4
3,726,957	-		PGA1_c35550	0.31	-0.3
3,726,964	-		PGA1_c35550	0.31	+1.2
3,726,964	-		PGA1_c35550	0.31	-0.2
3,726,964	-		PGA1_c35550	0.31	-0.8
3,726,998	-		PGA1_c35550	0.34	-1.6
3,727,000	+		PGA1_c35550	0.34	+0.1
3,727,008	+		PGA1_c35550	0.34	-0.2
3,727,027	+		PGA1_c35550	0.35	-0.8
3,727,027	+		PGA1_c35550	0.35	-1.1
3,727,027	+		PGA1_c35550	0.35	+1.3
3,727,027	+		PGA1_c35550	0.35	-0.2
3,727,027	+		PGA1_c35550	0.35	-1.2
3,727,035	-		PGA1_c35550	0.36	-1.5
3,727,035	-		PGA1_c35550	0.36	-1.5
3,727,035	-		PGA1_c35550	0.36	-1.2
3,727,035	-		PGA1_c35550	0.36	+1.2
3,727,035	-		PGA1_c35550	0.36	-0.5
3,727,035	-		PGA1_c35550	0.36	+0.6
3,727,035	-		PGA1_c35550	0.36	-0.1
3,727,043	-		PGA1_c35550	0.36	+0.8
3,727,049	+		PGA1_c35550	0.37	+0.2
3,727,049	+		PGA1_c35550	0.37	-0.1
3,727,049	+		PGA1_c35550	0.37	+1.5
3,727,057	-		PGA1_c35550	0.37	-0.7
3,727,095	+		PGA1_c35550	0.40	-2.1
3,727,095	+		PGA1_c35550	0.40	+1.4
3,727,116	+		PGA1_c35550	0.41	+1.1
3,727,141	-		PGA1_c35550	0.42	+1.2
3,727,153	+		PGA1_c35550	0.43	+0.4
3,727,161	-		PGA1_c35550	0.44	-0.1
3,727,164	+		PGA1_c35550	0.44	-0.8
3,727,174	-		PGA1_c35550	0.44	-0.0
3,727,307	+		PGA1_c35550	0.53	-0.7
3,727,331	+		PGA1_c35550	0.54	-0.6
3,727,331	+		PGA1_c35550	0.54	-1.2
3,727,346	-		PGA1_c35550	0.55	-0.6
3,727,369	+		PGA1_c35550	0.56	-1.4
3,727,381	+		PGA1_c35550	0.57	-0.6
3,727,386	+		PGA1_c35550	0.57	+0.1
3,727,428	-		PGA1_c35550	0.60	-0.0
3,727,456	-		PGA1_c35550	0.62	-0.0
3,727,500	-		PGA1_c35550	0.65	-1.9
3,727,526	+		PGA1_c35550	0.66	+0.4
3,727,526	+		PGA1_c35550	0.66	+1.6
3,727,526	+		PGA1_c35550	0.66	-0.2
3,727,526	+		PGA1_c35550	0.66	+0.9
3,727,526	+		PGA1_c35550	0.66	-0.3
3,727,526	+		PGA1_c35550	0.66	-0.4
3,727,527	-		PGA1_c35550	0.66	-1.0
3,727,623	+		PGA1_c35550	0.72	-2.0
3,727,629	-		PGA1_c35550	0.72	+0.5
3,727,631	+		PGA1_c35550	0.73	-0.2
3,727,637	-		PGA1_c35550	0.73	-0.4
3,727,670	+		PGA1_c35550	0.75	+0.2
3,727,685	-		PGA1_c35550	0.76	-0.3
3,727,749	+		PGA1_c35550	0.80	+0.3
3,727,783	+		PGA1_c35550	0.82	-0.1
3,727,791	+		PGA1_c35550	0.82	-0.2
3,727,791	-		PGA1_c35550	0.82	+0.6
3,727,796	-		PGA1_c35550	0.83	+0.5
3,727,822	+		PGA1_c35550	0.84	-1.1
3,727,822	+		PGA1_c35550	0.84	+0.1
3,727,822	+		PGA1_c35550	0.84	+0.2
3,727,830	-		PGA1_c35550	0.85	+0.9
3,727,871	+		PGA1_c35550	0.87	-0.8
3,727,878	+		PGA1_c35550	0.88	-1.1
3,727,886	-		PGA1_c35550	0.88	-0.4
3,727,886	-		PGA1_c35550	0.88	-0.4
3,727,915	+				-1.1
3,727,975	-				+0.5
3,728,068	-				+0.1
3,728,070	+				+2.0
3,728,122	-				-1.7
3,728,154	+				+0.1
3,728,161	+				-0.6
3,728,203	+				-0.6
3,728,203	+				-0.1
3,728,211	-				-0.2
3,728,213	+				+1.2
3,728,213	+				-1.6
3,728,213	+				-0.5
3,728,213	+				-0.1
3,728,213	+				+0.5
3,728,214	+				-0.2
3,728,221	-				+0.4
3,728,221	-				+1.1
3,728,221	-				-0.3
3,728,333	+				+0.2
3,728,518	+		PGA1_c35560	0.30	-1.2
3,728,534	+		PGA1_c35560	0.32	-1.2
3,728,581	+		PGA1_c35560	0.38	-0.5
3,728,586	+		PGA1_c35560	0.38	+0.5
3,728,594	-		PGA1_c35560	0.39	-0.4
3,728,618	+		PGA1_c35560	0.42	-1.1
3,728,621	-		PGA1_c35560	0.43	-0.7
3,728,627	-		PGA1_c35560	0.43	-0.6
3,728,669	+		PGA1_c35560	0.48	-0.9
3,728,712	+		PGA1_c35560	0.53	+0.8
3,728,737	+		PGA1_c35560	0.56	-0.4
3,728,742	-		PGA1_c35560	0.57	+0.8
3,728,819	+		PGA1_c35560	0.66	+0.3
3,728,819	+		PGA1_c35560	0.66	-1.6
3,728,837	-		PGA1_c35560	0.68	-0.2
3,728,865	-		PGA1_c35560	0.72	+0.4
3,728,899	-		PGA1_c35560	0.76	-1.0
3,728,904	-		PGA1_c35560	0.76	-0.3
3,728,904	-		PGA1_c35560	0.76	+1.0
3,728,955	+		PGA1_c35560	0.82	-0.8
3,728,955	+		PGA1_c35560	0.82	+0.3
3,728,955	+		PGA1_c35560	0.82	+0.4
3,728,964	+		PGA1_c35560	0.84	+0.3
3,728,970	-		PGA1_c35560	0.84	+0.0
3,728,986	+		PGA1_c35560	0.86	-0.7
3,729,004	+		PGA1_c35560	0.88	-0.8
3,729,008	+		PGA1_c35560	0.89	-1.2
3,729,019	+				+0.6