Experiment: D-Xylose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c03600 and PGA1_c03610 are separated by 264 nucleotides PGA1_c03610 and PGA1_c03620 are separated by 12 nucleotides PGA1_c03620 and PGA1_c03630 are separated by 2 nucleotides
PGA1_c03600: PGA1_c03600 - 2-oxoglutarate dehydrogenase E1 component SucA, at 345,766 to 348,723
_c03600
PGA1_c03610: PGA1_c03610 - succinyl-CoA ligase [ADP-forming] subunit alpha, at 348,988 to 349,872
_c03610
PGA1_c03620: PGA1_c03620 - hypothetical protein, at 349,885 to 350,238
_c03620
PGA1_c03630: PGA1_c03630 - succinyl-CoA ligase [ADP-forming] subunit beta, at 350,241 to 351,434
_c03630
Position (kb) 348
349
350 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 348.739 kb on - strand at 348.759 kb on - strand at 348.798 kb on + strand at 348.840 kb on + strand at 348.910 kb on - strand at 349.977 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.050 kb on - strand, within PGA1_c03620 at 350.075 kb on - strand, within PGA1_c03620 at 350.075 kb on - strand, within PGA1_c03620 at 350.094 kb on - strand, within PGA1_c03620 at 350.094 kb on - strand, within PGA1_c03620 at 350.094 kb on - strand, within PGA1_c03620 at 350.094 kb on - strand, within PGA1_c03620 at 350.094 kb on - strand, within PGA1_c03620 at 350.149 kb on - strand, within PGA1_c03620 at 350.180 kb on - strand, within PGA1_c03620 at 350.214 kb on - strand at 350.246 kb on - strand at 350.246 kb on - strand at 350.246 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose (C) remove 348,739 - -1.0 348,759 - -0.1 348,798 + -0.1 348,840 + +0.6 348,910 - -0.5 349,977 - PGA1_c03620 0.26 -0.8 350,050 - PGA1_c03620 0.47 -3.5 350,050 - PGA1_c03620 0.47 -0.1 350,050 - PGA1_c03620 0.47 -1.1 350,050 - PGA1_c03620 0.47 -1.8 350,050 - PGA1_c03620 0.47 +0.5 350,050 - PGA1_c03620 0.47 -0.3 350,050 - PGA1_c03620 0.47 -0.5 350,075 - PGA1_c03620 0.54 -1.2 350,075 - PGA1_c03620 0.54 -1.4 350,094 - PGA1_c03620 0.59 -1.4 350,094 - PGA1_c03620 0.59 -1.3 350,094 - PGA1_c03620 0.59 -0.1 350,094 - PGA1_c03620 0.59 -0.7 350,094 - PGA1_c03620 0.59 +0.0 350,149 - PGA1_c03620 0.75 -1.8 350,180 - PGA1_c03620 0.83 -0.1 350,214 - +1.2 350,246 - -1.3 350,246 - +0.2 350,246 - +0.2
Or see this region's nucleotide sequence