Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3431 and HP15_3432 are separated by 40 nucleotides HP15_3432 and HP15_3433 are separated by 78 nucleotides
HP15_3431: HP15_3431 - multi-sensor signal transduction histidine kinase, at 3,607,942 to 3,609,765
_3431
HP15_3432: HP15_3432 - bacterioferritin, at 3,609,806 to 3,610,345
_3432
HP15_3433: HP15_3433 - Aconitate hydratase (EC 4.2.1.3) (from data) , at 3,610,424 to 3,613,183
_3433
Position (kb)
3609
3610
3611 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3608.848 kb on + strand, within HP15_3431 at 3608.856 kb on - strand, within HP15_3431 at 3608.856 kb on - strand, within HP15_3431 at 3608.876 kb on + strand, within HP15_3431 at 3609.049 kb on - strand, within HP15_3431 at 3609.200 kb on + strand, within HP15_3431 at 3609.298 kb on + strand, within HP15_3431 at 3609.400 kb on - strand, within HP15_3431 at 3609.419 kb on - strand, within HP15_3431 at 3609.438 kb on - strand, within HP15_3431 at 3609.477 kb on + strand, within HP15_3431 at 3609.547 kb on - strand, within HP15_3431 at 3609.566 kb on - strand, within HP15_3431 at 3609.604 kb on + strand at 3609.620 kb on + strand at 3609.645 kb on - strand at 3609.919 kb on + strand, within HP15_3432 at 3610.127 kb on + strand, within HP15_3432 at 3610.135 kb on - strand, within HP15_3432 at 3610.262 kb on - strand, within HP15_3432 at 3610.311 kb on - strand at 3610.349 kb on - strand at 3610.375 kb on + strand at 3610.429 kb on - strand at 3610.431 kb on + strand at 3610.473 kb on + strand at 3610.526 kb on + strand at 3610.539 kb on - strand at 3610.640 kb on + strand at 3610.693 kb on + strand at 3610.783 kb on + strand, within HP15_3433 at 3610.798 kb on - strand, within HP15_3433 at 3610.878 kb on - strand, within HP15_3433 at 3610.958 kb on + strand, within HP15_3433 at 3610.958 kb on + strand, within HP15_3433 at 3610.966 kb on - strand, within HP15_3433 at 3611.005 kb on - strand, within HP15_3433 at 3611.165 kb on - strand, within HP15_3433 at 3611.192 kb on - strand, within HP15_3433 at 3611.213 kb on + strand, within HP15_3433 at 3611.221 kb on - strand, within HP15_3433 at 3611.221 kb on - strand, within HP15_3433 at 3611.221 kb on - strand, within HP15_3433
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 3,608,848 + HP15_3431 0.50 -0.0 3,608,856 - HP15_3431 0.50 -0.3 3,608,856 - HP15_3431 0.50 -0.1 3,608,876 + HP15_3431 0.51 -0.7 3,609,049 - HP15_3431 0.61 +1.6 3,609,200 + HP15_3431 0.69 +0.0 3,609,298 + HP15_3431 0.74 +2.1 3,609,400 - HP15_3431 0.80 -0.2 3,609,419 - HP15_3431 0.81 -0.0 3,609,438 - HP15_3431 0.82 +1.5 3,609,477 + HP15_3431 0.84 -0.3 3,609,547 - HP15_3431 0.88 -0.2 3,609,566 - HP15_3431 0.89 -0.1 3,609,604 + +0.0 3,609,620 + -0.3 3,609,645 - -0.2 3,609,919 + HP15_3432 0.21 -0.0 3,610,127 + HP15_3432 0.59 -0.0 3,610,135 - HP15_3432 0.61 -0.3 3,610,262 - HP15_3432 0.84 -1.8 3,610,311 - -0.3 3,610,349 - +1.8 3,610,375 + -0.0 3,610,429 - -0.2 3,610,431 + -0.8 3,610,473 + -0.4 3,610,526 + +1.4 3,610,539 - -0.3 3,610,640 + +1.6 3,610,693 + -1.6 3,610,783 + HP15_3433 0.13 -1.6 3,610,798 - HP15_3433 0.14 -0.7 3,610,878 - HP15_3433 0.16 -0.5 3,610,958 + HP15_3433 0.19 -1.9 3,610,958 + HP15_3433 0.19 +0.8 3,610,966 - HP15_3433 0.20 -2.0 3,611,005 - HP15_3433 0.21 -0.2 3,611,165 - HP15_3433 0.27 -0.8 3,611,192 - HP15_3433 0.28 +0.5 3,611,213 + HP15_3433 0.29 +0.9 3,611,221 - HP15_3433 0.29 +1.3 3,611,221 - HP15_3433 0.29 +0.9 3,611,221 - HP15_3433 0.29 -1.0
Or see this region's nucleotide sequence