Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3516

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_3515 and Psest_3516 are separated by 128 nucleotidesPsest_3516 and Psest_3517 are separated by 145 nucleotides Psest_3515: Psest_3515 - Na+-dependent transporters of the SNF family, at 3,691,418 to 3,692,827 _3515 Psest_3516: Psest_3516 - Leucine dehydrogenase (EC 1.4.1.9) (from data), at 3,692,956 to 3,694,050 _3516 Psest_3517: Psest_3517 - branched-chain ketoacid ferredoxin reductase (EC 1.2.7.7) active on 4-methyl-2-oxopentanoate, (S)-3-methyl-2-oxopentanoate, or 3-methyl-2-oxobutanoate (from data), at 3,694,196 to 3,697,666 _3517 Position (kb) 3692 3693 3694 3695Strain fitness (log2 ratio) -2 -1 0 1 2 3at 3692.037 kb on + strand, within Psest_3515at 3692.038 kb on - strand, within Psest_3515at 3692.190 kb on + strand, within Psest_3515at 3692.190 kb on + strand, within Psest_3515at 3692.190 kb on + strand, within Psest_3515at 3692.415 kb on + strand, within Psest_3515at 3692.415 kb on + strand, within Psest_3515at 3692.415 kb on + strand, within Psest_3515at 3692.415 kb on + strand, within Psest_3515at 3692.415 kb on + strand, within Psest_3515at 3692.415 kb on + strand, within Psest_3515at 3692.415 kb on + strand, within Psest_3515at 3692.415 kb on + strand, within Psest_3515at 3692.416 kb on - strand, within Psest_3515at 3692.416 kb on - strand, within Psest_3515at 3692.416 kb on - strand, within Psest_3515at 3692.416 kb on - strand, within Psest_3515at 3692.445 kb on + strand, within Psest_3515at 3692.445 kb on + strand, within Psest_3515at 3692.446 kb on - strand, within Psest_3515at 3692.628 kb on + strand, within Psest_3515at 3692.628 kb on + strand, within Psest_3515at 3692.629 kb on - strand, within Psest_3515at 3692.629 kb on - strand, within Psest_3515at 3692.629 kb on - strand, within Psest_3515at 3692.629 kb on - strand, within Psest_3515at 3692.670 kb on + strand, within Psest_3515at 3692.687 kb on - strandat 3693.150 kb on - strand, within Psest_3516at 3693.152 kb on + strand, within Psest_3516at 3693.152 kb on + strand, within Psest_3516at 3693.153 kb on - strand, within Psest_3516at 3693.186 kb on - strand, within Psest_3516at 3693.186 kb on - strand, within Psest_3516at 3693.356 kb on + strand, within Psest_3516at 3693.356 kb on + strand, within Psest_3516at 3693.356 kb on + strand, within Psest_3516at 3693.357 kb on - strand, within Psest_3516at 3693.720 kb on + strand, within Psest_3516at 3693.720 kb on + strand, within Psest_3516at 3693.721 kb on - strand, within Psest_3516at 3693.721 kb on - strand, within Psest_3516at 3693.723 kb on - strand, within Psest_3516at 3693.723 kb on - strand, within Psest_3516at 3693.723 kb on - strand, within Psest_3516at 3693.908 kb on + strand, within Psest_3516at 3694.099 kb on + strandat 3694.100 kb on - strandat 3694.100 kb on - strandat 3694.100 kb on - strandat 3694.100 kb on - strandat 3694.362 kb on + strandat 3694.611 kb on + strand, within Psest_3517at 3694.612 kb on - strand, within Psest_3517at 3694.612 kb on - strand, within Psest_3517at 3694.662 kb on + strand, within Psest_3517at 3694.662 kb on + strand, within Psest_3517at 3694.662 kb on + strand, within Psest_3517at 3694.680 kb on + strand, within Psest_3517at 3694.692 kb on + strand, within Psest_3517at 3694.692 kb on + strand, within Psest_3517at 3694.693 kb on - strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.710 kb on + strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.711 kb on - strand, within Psest_3517at 3694.714 kb on - strand, within Psest_3517

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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3,692,037 + Psest_3515 0.44 +1.7
3,692,038 - Psest_3515 0.44 +0.5
3,692,190 + Psest_3515 0.55 +1.0
3,692,190 + Psest_3515 0.55 +0.7
3,692,190 + Psest_3515 0.55 +1.7
3,692,415 + Psest_3515 0.71 +1.7
3,692,415 + Psest_3515 0.71 -0.8
3,692,415 + Psest_3515 0.71 +1.1
3,692,415 + Psest_3515 0.71 -1.7
3,692,415 + Psest_3515 0.71 -0.3
3,692,415 + Psest_3515 0.71 -0.3
3,692,415 + Psest_3515 0.71 -1.1
3,692,415 + Psest_3515 0.71 -0.6
3,692,416 - Psest_3515 0.71 +0.7
3,692,416 - Psest_3515 0.71 +0.7
3,692,416 - Psest_3515 0.71 +3.3
3,692,416 - Psest_3515 0.71 +1.7
3,692,445 + Psest_3515 0.73 -0.9
3,692,445 + Psest_3515 0.73 -2.5
3,692,446 - Psest_3515 0.73 +1.7
3,692,628 + Psest_3515 0.86 -1.3
3,692,628 + Psest_3515 0.86 -1.1
3,692,629 - Psest_3515 0.86 +1.7
3,692,629 - Psest_3515 0.86 +1.7
3,692,629 - Psest_3515 0.86 +1.7
3,692,629 - Psest_3515 0.86 +1.7
3,692,670 + Psest_3515 0.89 -0.0
3,692,687 - +1.7
3,693,150 - Psest_3516 0.18 +0.1
3,693,152 + Psest_3516 0.18 -0.6
3,693,152 + Psest_3516 0.18 -0.1
3,693,153 - Psest_3516 0.18 -0.6
3,693,186 - Psest_3516 0.21 +1.7
3,693,186 - Psest_3516 0.21 -0.5
3,693,356 + Psest_3516 0.37 -2.3
3,693,356 + Psest_3516 0.37 +0.8
3,693,356 + Psest_3516 0.37 +0.4
3,693,357 - Psest_3516 0.37 -0.4
3,693,720 + Psest_3516 0.70 -0.6
3,693,720 + Psest_3516 0.70 -1.7
3,693,721 - Psest_3516 0.70 -1.4
3,693,721 - Psest_3516 0.70 +0.7
3,693,723 - Psest_3516 0.70 +0.1
3,693,723 - Psest_3516 0.70 +2.1
3,693,723 - Psest_3516 0.70 -0.9
3,693,908 + Psest_3516 0.87 -0.9
3,694,099 + -1.9
3,694,100 - -1.3
3,694,100 - -0.1
3,694,100 - +1.7
3,694,100 - +0.1
3,694,362 + -1.1
3,694,611 + Psest_3517 0.12 -0.3
3,694,612 - Psest_3517 0.12 +1.0
3,694,612 - Psest_3517 0.12 -0.3
3,694,662 + Psest_3517 0.13 +1.4
3,694,662 + Psest_3517 0.13 +1.7
3,694,662 + Psest_3517 0.13 -0.3
3,694,680 + Psest_3517 0.14 +1.7
3,694,692 + Psest_3517 0.14 +0.6
3,694,692 + Psest_3517 0.14 +1.2
3,694,693 - Psest_3517 0.14 -0.0
3,694,710 + Psest_3517 0.15 -0.2
3,694,710 + Psest_3517 0.15 -1.7
3,694,710 + Psest_3517 0.15 +0.3
3,694,710 + Psest_3517 0.15 +0.1
3,694,710 + Psest_3517 0.15 +2.0
3,694,710 + Psest_3517 0.15 -1.7
3,694,711 - Psest_3517 0.15 +0.7
3,694,711 - Psest_3517 0.15 -0.9
3,694,711 - Psest_3517 0.15 +1.7
3,694,711 - Psest_3517 0.15 -0.6
3,694,711 - Psest_3517 0.15 -1.6
3,694,711 - Psest_3517 0.15 +0.4
3,694,711 - Psest_3517 0.15 +0.5
3,694,714 - Psest_3517 0.15 +1.9

Or see this region's nucleotide sequence