Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3321

Experiment: Furfuryl Alcohol 0.05 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3320 and Psest_3321 are separated by 2 nucleotidesPsest_3321 and Psest_3322 are separated by 40 nucleotides Psest_3320: Psest_3320 - Predicted Zn-dependent proteases and their inactivated homologs, at 3,482,322 to 3,483,764 _3320 Psest_3321: Psest_3321 - Predicted amidohydrolase, at 3,483,767 to 3,484,612 _3321 Psest_3322: Psest_3322 - TIGR02099 family protein, at 3,484,653 to 3,488,456 _3322 Position (kb) 3483 3484 3485Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3482.774 kb on + strand, within Psest_3320at 3482.775 kb on - strand, within Psest_3320at 3482.775 kb on - strand, within Psest_3320at 3482.775 kb on - strand, within Psest_3320at 3482.776 kb on + strand, within Psest_3320at 3482.776 kb on + strand, within Psest_3320at 3482.776 kb on + strand, within Psest_3320at 3482.776 kb on + strand, within Psest_3320at 3482.776 kb on + strand, within Psest_3320at 3482.776 kb on + strand, within Psest_3320at 3482.776 kb on + strand, within Psest_3320at 3482.777 kb on - strand, within Psest_3320at 3482.777 kb on - strand, within Psest_3320at 3482.777 kb on - strand, within Psest_3320at 3482.777 kb on - strand, within Psest_3320at 3483.124 kb on + strand, within Psest_3320at 3483.124 kb on + strand, within Psest_3320at 3483.125 kb on - strand, within Psest_3320at 3483.125 kb on - strand, within Psest_3320at 3483.400 kb on + strand, within Psest_3320at 3483.519 kb on - strand, within Psest_3320at 3483.520 kb on + strand, within Psest_3320at 3483.644 kb on - strandat 3483.644 kb on - strandat 3483.644 kb on - strandat 3483.764 kb on + strandat 3483.764 kb on + strandat 3483.765 kb on - strandat 3483.906 kb on - strand, within Psest_3321at 3483.932 kb on - strand, within Psest_3321at 3483.995 kb on - strand, within Psest_3321at 3483.996 kb on + strand, within Psest_3321at 3483.996 kb on + strand, within Psest_3321at 3483.996 kb on + strand, within Psest_3321at 3483.996 kb on + strand, within Psest_3321at 3483.996 kb on + strand, within Psest_3321at 3483.996 kb on + strand, within Psest_3321at 3483.996 kb on + strand, within Psest_3321at 3483.996 kb on + strand, within Psest_3321at 3483.996 kb on + strand, within Psest_3321at 3483.996 kb on + strand, within Psest_3321at 3483.996 kb on + strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3483.997 kb on - strand, within Psest_3321at 3484.115 kb on - strand, within Psest_3321at 3484.116 kb on + strand, within Psest_3321at 3484.117 kb on - strand, within Psest_3321at 3484.117 kb on - strand, within Psest_3321at 3484.117 kb on - strand, within Psest_3321at 3484.206 kb on + strand, within Psest_3321at 3484.275 kb on + strand, within Psest_3321at 3484.471 kb on + strand, within Psest_3321at 3484.595 kb on + strandat 3484.596 kb on - strandat 3484.596 kb on - strandat 3484.720 kb on + strandat 3484.777 kb on - strandat 3484.848 kb on + strandat 3484.993 kb on + strandat 3484.993 kb on + strandat 3484.993 kb on + strandat 3484.993 kb on + strandat 3484.993 kb on + strandat 3484.994 kb on - strandat 3484.994 kb on - strandat 3484.994 kb on - strandat 3485.290 kb on + strand, within Psest_3322at 3485.291 kb on - strand, within Psest_3322at 3485.291 kb on - strand, within Psest_3322

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
remove
3,482,774 + Psest_3320 0.31 +0.6
3,482,775 - Psest_3320 0.31 +1.2
3,482,775 - Psest_3320 0.31 +0.4
3,482,775 - Psest_3320 0.31 -0.6
3,482,776 + Psest_3320 0.31 +1.3
3,482,776 + Psest_3320 0.31 +1.9
3,482,776 + Psest_3320 0.31 +1.6
3,482,776 + Psest_3320 0.31 +1.2
3,482,776 + Psest_3320 0.31 +0.5
3,482,776 + Psest_3320 0.31 +0.3
3,482,776 + Psest_3320 0.31 +1.3
3,482,777 - Psest_3320 0.32 -0.7
3,482,777 - Psest_3320 0.32 +0.0
3,482,777 - Psest_3320 0.32 -0.6
3,482,777 - Psest_3320 0.32 -2.4
3,483,124 + Psest_3320 0.56 +2.5
3,483,124 + Psest_3320 0.56 +1.7
3,483,125 - Psest_3320 0.56 -0.5
3,483,125 - Psest_3320 0.56 -1.6
3,483,400 + Psest_3320 0.75 +0.6
3,483,519 - Psest_3320 0.83 -0.2
3,483,520 + Psest_3320 0.83 +0.4
3,483,644 - +2.0
3,483,644 - +1.0
3,483,644 - +0.2
3,483,764 + -0.6
3,483,764 + +1.6
3,483,765 - -0.0
3,483,906 - Psest_3321 0.16 +1.0
3,483,932 - Psest_3321 0.20 +5.0
3,483,995 - Psest_3321 0.27 -0.4
3,483,996 + Psest_3321 0.27 -0.1
3,483,996 + Psest_3321 0.27 -1.7
3,483,996 + Psest_3321 0.27 +1.1
3,483,996 + Psest_3321 0.27 +1.6
3,483,996 + Psest_3321 0.27 +1.6
3,483,996 + Psest_3321 0.27 +0.9
3,483,996 + Psest_3321 0.27 +1.2
3,483,996 + Psest_3321 0.27 +1.4
3,483,996 + Psest_3321 0.27 -1.2
3,483,996 + Psest_3321 0.27 -1.2
3,483,996 + Psest_3321 0.27 -1.0
3,483,997 - Psest_3321 0.27 -0.9
3,483,997 - Psest_3321 0.27 +3.9
3,483,997 - Psest_3321 0.27 +2.8
3,483,997 - Psest_3321 0.27 +0.3
3,483,997 - Psest_3321 0.27 +1.6
3,483,997 - Psest_3321 0.27 +1.3
3,483,997 - Psest_3321 0.27 +0.8
3,483,997 - Psest_3321 0.27 +1.6
3,483,997 - Psest_3321 0.27 +1.2
3,483,997 - Psest_3321 0.27 -0.0
3,483,997 - Psest_3321 0.27 +2.9
3,483,997 - Psest_3321 0.27 -0.8
3,483,997 - Psest_3321 0.27 -0.4
3,483,997 - Psest_3321 0.27 -0.0
3,483,997 - Psest_3321 0.27 -0.4
3,483,997 - Psest_3321 0.27 -1.0
3,484,115 - Psest_3321 0.41 +1.3
3,484,116 + Psest_3321 0.41 +1.6
3,484,117 - Psest_3321 0.41 -0.9
3,484,117 - Psest_3321 0.41 -1.2
3,484,117 - Psest_3321 0.41 +0.6
3,484,206 + Psest_3321 0.52 +2.6
3,484,275 + Psest_3321 0.60 +1.5
3,484,471 + Psest_3321 0.83 -0.4
3,484,595 + +1.6
3,484,596 - +0.4
3,484,596 - +1.0
3,484,720 + -0.6
3,484,777 - +0.9
3,484,848 + -1.2
3,484,993 + -0.6
3,484,993 + -1.2
3,484,993 + -2.9
3,484,993 + -1.4
3,484,993 + -0.4
3,484,994 - +1.8
3,484,994 - -0.4
3,484,994 - -0.2
3,485,290 + Psest_3322 0.17 +0.6
3,485,291 - Psest_3322 0.17 +1.4
3,485,291 - Psest_3322 0.17 +2.3

Or see this region's nucleotide sequence