Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_3033

Experiment: Furfuryl Alcohol 0.05 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_3030 and Psest_3031 are separated by 44 nucleotidesPsest_3031 and Psest_3033 are separated by 349 nucleotidesPsest_3033 and Psest_3034 are separated by 133 nucleotidesPsest_3034 and Psest_3035 are separated by 139 nucleotides Psest_3030: Psest_3030 - phospho-2-dehydro-3-deoxyheptonate aldolase, at 3,215,932 to 3,217,005 _3030 Psest_3031: Psest_3031 - hypothetical protein, at 3,217,050 to 3,217,145 _3031 Psest_3033: Psest_3033 - Predicted ATPase of the PP-loop superfamily implicated in cell cycle control, at 3,217,495 to 3,218,319 _3033 Psest_3034: Psest_3034 - DnaJ-class molecular chaperone with C-terminal Zn finger domain, at 3,218,453 to 3,219,046 _3034 Psest_3035: Psest_3035 - Protein of unknown function (DUF1282)., at 3,219,186 to 3,219,785 _3035 Position (kb) 3217 3218 3219Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3216.518 kb on + strand, within Psest_3030at 3216.576 kb on + strand, within Psest_3030at 3216.692 kb on + strand, within Psest_3030at 3216.692 kb on + strand, within Psest_3030at 3216.693 kb on - strand, within Psest_3030at 3216.693 kb on - strand, within Psest_3030at 3216.759 kb on - strand, within Psest_3030at 3216.985 kb on + strandat 3216.985 kb on + strandat 3216.985 kb on + strandat 3216.986 kb on - strandat 3216.986 kb on - strandat 3216.986 kb on - strandat 3217.135 kb on + strand, within Psest_3031at 3217.254 kb on - strandat 3217.270 kb on - strandat 3217.305 kb on + strandat 3217.306 kb on - strandat 3217.306 kb on - strandat 3217.306 kb on - strandat 3217.306 kb on - strandat 3217.308 kb on + strandat 3217.746 kb on - strand, within Psest_3033at 3217.772 kb on + strand, within Psest_3033at 3217.940 kb on + strand, within Psest_3033at 3217.940 kb on + strand, within Psest_3033at 3217.941 kb on - strand, within Psest_3033at 3217.941 kb on - strand, within Psest_3033at 3217.941 kb on - strand, within Psest_3033at 3217.941 kb on - strand, within Psest_3033at 3218.018 kb on + strand, within Psest_3033at 3218.018 kb on + strand, within Psest_3033at 3218.019 kb on - strand, within Psest_3033at 3218.019 kb on - strand, within Psest_3033at 3218.019 kb on - strand, within Psest_3033at 3218.019 kb on - strand, within Psest_3033at 3218.019 kb on - strand, within Psest_3033at 3218.022 kb on + strand, within Psest_3033at 3218.023 kb on - strand, within Psest_3033at 3218.023 kb on - strand, within Psest_3033at 3218.023 kb on - strand, within Psest_3033at 3218.023 kb on - strand, within Psest_3033at 3218.042 kb on + strand, within Psest_3033at 3218.042 kb on + strand, within Psest_3033at 3218.042 kb on + strand, within Psest_3033at 3218.043 kb on - strand, within Psest_3033at 3218.043 kb on - strand, within Psest_3033at 3218.159 kb on + strand, within Psest_3033at 3218.159 kb on + strand, within Psest_3033at 3218.159 kb on + strand, within Psest_3033at 3218.159 kb on + strand, within Psest_3033at 3218.160 kb on - strand, within Psest_3033at 3218.160 kb on - strand, within Psest_3033at 3218.183 kb on + strand, within Psest_3033at 3218.183 kb on + strand, within Psest_3033at 3218.183 kb on + strand, within Psest_3033at 3218.183 kb on + strand, within Psest_3033at 3218.183 kb on + strand, within Psest_3033at 3218.184 kb on - strand, within Psest_3033at 3218.184 kb on - strand, within Psest_3033at 3218.184 kb on - strand, within Psest_3033at 3218.441 kb on + strandat 3218.499 kb on + strandat 3218.499 kb on + strandat 3218.499 kb on + strandat 3218.500 kb on - strandat 3218.645 kb on + strand, within Psest_3034at 3218.645 kb on + strand, within Psest_3034at 3218.646 kb on - strand, within Psest_3034at 3218.646 kb on - strand, within Psest_3034at 3218.646 kb on - strand, within Psest_3034at 3218.646 kb on - strand, within Psest_3034at 3218.646 kb on - strand, within Psest_3034at 3218.646 kb on - strand, within Psest_3034at 3218.646 kb on - strand, within Psest_3034at 3218.646 kb on - strand, within Psest_3034at 3218.715 kb on + strand, within Psest_3034at 3218.716 kb on - strand, within Psest_3034at 3218.723 kb on + strand, within Psest_3034at 3218.724 kb on - strand, within Psest_3034at 3218.725 kb on + strand, within Psest_3034at 3218.725 kb on + strand, within Psest_3034at 3218.725 kb on + strand, within Psest_3034at 3218.725 kb on + strand, within Psest_3034at 3218.726 kb on - strand, within Psest_3034at 3218.726 kb on - strand, within Psest_3034at 3218.726 kb on - strand, within Psest_3034at 3218.726 kb on - strand, within Psest_3034at 3218.726 kb on - strand, within Psest_3034at 3218.726 kb on - strand, within Psest_3034at 3218.772 kb on - strand, within Psest_3034at 3218.772 kb on - strand, within Psest_3034at 3218.774 kb on + strand, within Psest_3034at 3218.774 kb on + strand, within Psest_3034at 3218.775 kb on - strand, within Psest_3034at 3218.775 kb on - strand, within Psest_3034at 3218.775 kb on - strand, within Psest_3034at 3218.775 kb on - strand, within Psest_3034at 3218.775 kb on - strand, within Psest_3034at 3218.895 kb on + strand, within Psest_3034at 3218.896 kb on - strand, within Psest_3034at 3218.896 kb on - strand, within Psest_3034at 3218.918 kb on - strand, within Psest_3034at 3219.024 kb on + strandat 3219.101 kb on + strandat 3219.102 kb on - strandat 3219.102 kb on - strandat 3219.102 kb on - strandat 3219.102 kb on - strandat 3219.102 kb on - strandat 3219.103 kb on + strandat 3219.113 kb on + strandat 3219.113 kb on + strandat 3219.113 kb on + strandat 3219.273 kb on + strand, within Psest_3035at 3219.273 kb on + strand, within Psest_3035at 3219.273 kb on + strand, within Psest_3035at 3219.273 kb on + strand, within Psest_3035at 3219.273 kb on + strand, within Psest_3035at 3219.273 kb on + strand, within Psest_3035at 3219.273 kb on + strand, within Psest_3035at 3219.274 kb on - strand, within Psest_3035at 3219.274 kb on - strand, within Psest_3035at 3219.274 kb on - strand, within Psest_3035at 3219.274 kb on - strand, within Psest_3035at 3219.274 kb on - strand, within Psest_3035

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
remove
3,216,518 + Psest_3030 0.55 +3.3
3,216,576 + Psest_3030 0.60 +0.5
3,216,692 + Psest_3030 0.71 +0.3
3,216,692 + Psest_3030 0.71 +0.0
3,216,693 - Psest_3030 0.71 -2.2
3,216,693 - Psest_3030 0.71 +0.8
3,216,759 - Psest_3030 0.77 -0.6
3,216,985 + +3.0
3,216,985 + -2.3
3,216,985 + +2.7
3,216,986 - +2.1
3,216,986 - +3.5
3,216,986 - +1.9
3,217,135 + Psest_3031 0.89 -1.7
3,217,254 - -1.7
3,217,270 - -2.4
3,217,305 + -3.3
3,217,306 - -1.3
3,217,306 - -1.3
3,217,306 - -0.2
3,217,306 - +0.3
3,217,308 + -1.6
3,217,746 - Psest_3033 0.30 +1.6
3,217,772 + Psest_3033 0.34 +0.5
3,217,940 + Psest_3033 0.54 +2.0
3,217,940 + Psest_3033 0.54 -1.0
3,217,941 - Psest_3033 0.54 +2.3
3,217,941 - Psest_3033 0.54 +0.7
3,217,941 - Psest_3033 0.54 +0.3
3,217,941 - Psest_3033 0.54 -0.0
3,218,018 + Psest_3033 0.63 +2.7
3,218,018 + Psest_3033 0.63 +0.2
3,218,019 - Psest_3033 0.64 -1.0
3,218,019 - Psest_3033 0.64 +0.8
3,218,019 - Psest_3033 0.64 -0.3
3,218,019 - Psest_3033 0.64 +3.7
3,218,019 - Psest_3033 0.64 +2.6
3,218,022 + Psest_3033 0.64 -2.5
3,218,023 - Psest_3033 0.64 +0.1
3,218,023 - Psest_3033 0.64 +2.7
3,218,023 - Psest_3033 0.64 -1.3
3,218,023 - Psest_3033 0.64 +1.3
3,218,042 + Psest_3033 0.66 +1.2
3,218,042 + Psest_3033 0.66 +1.2
3,218,042 + Psest_3033 0.66 +0.8
3,218,043 - Psest_3033 0.66 +1.4
3,218,043 - Psest_3033 0.66 -2.0
3,218,159 + Psest_3033 0.80 +0.7
3,218,159 + Psest_3033 0.80 -0.4
3,218,159 + Psest_3033 0.80 -2.4
3,218,159 + Psest_3033 0.80 +1.0
3,218,160 - Psest_3033 0.81 +0.7
3,218,160 - Psest_3033 0.81 +1.2
3,218,183 + Psest_3033 0.83 +1.5
3,218,183 + Psest_3033 0.83 -0.1
3,218,183 + Psest_3033 0.83 +1.3
3,218,183 + Psest_3033 0.83 -2.6
3,218,183 + Psest_3033 0.83 +0.3
3,218,184 - Psest_3033 0.84 +0.6
3,218,184 - Psest_3033 0.84 +2.1
3,218,184 - Psest_3033 0.84 +0.9
3,218,441 + -0.8
3,218,499 + +0.6
3,218,499 + -0.2
3,218,499 + -1.0
3,218,500 - -1.6
3,218,645 + Psest_3034 0.32 +2.7
3,218,645 + Psest_3034 0.32 +0.5
3,218,646 - Psest_3034 0.32 +1.2
3,218,646 - Psest_3034 0.32 -1.6
3,218,646 - Psest_3034 0.32 +1.0
3,218,646 - Psest_3034 0.32 -2.8
3,218,646 - Psest_3034 0.32 +0.6
3,218,646 - Psest_3034 0.32 -1.2
3,218,646 - Psest_3034 0.32 +1.3
3,218,646 - Psest_3034 0.32 +1.0
3,218,715 + Psest_3034 0.44 +2.7
3,218,716 - Psest_3034 0.44 +0.2
3,218,723 + Psest_3034 0.45 +0.9
3,218,724 - Psest_3034 0.46 +3.9
3,218,725 + Psest_3034 0.46 +0.4
3,218,725 + Psest_3034 0.46 +1.4
3,218,725 + Psest_3034 0.46 -0.4
3,218,725 + Psest_3034 0.46 +0.7
3,218,726 - Psest_3034 0.46 -1.8
3,218,726 - Psest_3034 0.46 +0.1
3,218,726 - Psest_3034 0.46 -0.4
3,218,726 - Psest_3034 0.46 +0.0
3,218,726 - Psest_3034 0.46 +1.4
3,218,726 - Psest_3034 0.46 -0.8
3,218,772 - Psest_3034 0.54 +1.7
3,218,772 - Psest_3034 0.54 -3.5
3,218,774 + Psest_3034 0.54 +0.0
3,218,774 + Psest_3034 0.54 +0.4
3,218,775 - Psest_3034 0.54 +0.1
3,218,775 - Psest_3034 0.54 -1.7
3,218,775 - Psest_3034 0.54 +1.2
3,218,775 - Psest_3034 0.54 +1.4
3,218,775 - Psest_3034 0.54 -0.0
3,218,895 + Psest_3034 0.74 -3.2
3,218,896 - Psest_3034 0.75 +1.6
3,218,896 - Psest_3034 0.75 -0.2
3,218,918 - Psest_3034 0.78 +0.7
3,219,024 + +3.0
3,219,101 + -0.2
3,219,102 - +1.3
3,219,102 - -2.4
3,219,102 - +0.6
3,219,102 - +1.7
3,219,102 - +0.2
3,219,103 + -1.4
3,219,113 + -0.3
3,219,113 + +0.6
3,219,113 + -0.6
3,219,273 + Psest_3035 0.14 -1.2
3,219,273 + Psest_3035 0.14 -0.7
3,219,273 + Psest_3035 0.14 -0.1
3,219,273 + Psest_3035 0.14 +0.5
3,219,273 + Psest_3035 0.14 +0.2
3,219,273 + Psest_3035 0.14 +0.6
3,219,273 + Psest_3035 0.14 -1.9
3,219,274 - Psest_3035 0.15 -3.2
3,219,274 - Psest_3035 0.15 -0.8
3,219,274 - Psest_3035 0.15 +1.6
3,219,274 - Psest_3035 0.15 -0.6
3,219,274 - Psest_3035 0.15 +0.0

Or see this region's nucleotide sequence