Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2998

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2997 and Psest_2998 are separated by 45 nucleotidesPsest_2998 and Psest_2999 are separated by 61 nucleotidesPsest_2999 and Psest_3000 are separated by 4 nucleotides Psest_2997: Psest_2997 - Long-chain fatty acid transport protein, at 3,187,215 to 3,188,477 _2997 Psest_2998: Psest_2998 - Glutathione peroxidase, at 3,188,523 to 3,189,071 _2998 Psest_2999: Psest_2999 - molybdenum ABC transporter, periplasmic molybdate-binding protein, at 3,189,133 to 3,189,978 _2999 Psest_3000: Psest_3000 - molybdate ABC transporter, permease protein, at 3,189,983 to 3,190,663 _3000 Position (kb) 3188 3189 3190Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 3187.549 kb on - strand, within Psest_2997at 3187.549 kb on - strand, within Psest_2997at 3187.551 kb on + strand, within Psest_2997at 3187.551 kb on + strand, within Psest_2997at 3187.551 kb on + strand, within Psest_2997at 3187.552 kb on - strand, within Psest_2997at 3187.552 kb on - strand, within Psest_2997at 3187.552 kb on - strand, within Psest_2997at 3187.552 kb on - strand, within Psest_2997at 3187.552 kb on - strand, within Psest_2997at 3187.594 kb on + strand, within Psest_2997at 3187.595 kb on - strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.596 kb on + strand, within Psest_2997at 3187.597 kb on - strand, within Psest_2997at 3187.597 kb on - strand, within Psest_2997at 3187.597 kb on - strand, within Psest_2997at 3187.597 kb on - strand, within Psest_2997at 3187.597 kb on - strand, within Psest_2997at 3187.597 kb on - strand, within Psest_2997at 3187.597 kb on - strand, within Psest_2997at 3187.597 kb on - strand, within Psest_2997at 3187.624 kb on - strand, within Psest_2997at 3187.659 kb on + strand, within Psest_2997at 3187.720 kb on + strand, within Psest_2997at 3187.831 kb on + strand, within Psest_2997at 3187.832 kb on - strand, within Psest_2997at 3187.832 kb on - strand, within Psest_2997at 3187.908 kb on + strand, within Psest_2997at 3187.909 kb on - strand, within Psest_2997at 3187.909 kb on - strand, within Psest_2997at 3187.926 kb on - strand, within Psest_2997at 3187.971 kb on + strand, within Psest_2997at 3187.971 kb on + strand, within Psest_2997at 3187.972 kb on - strand, within Psest_2997at 3188.052 kb on + strand, within Psest_2997at 3188.176 kb on - strand, within Psest_2997at 3188.176 kb on - strand, within Psest_2997at 3188.193 kb on + strand, within Psest_2997at 3188.194 kb on - strand, within Psest_2997at 3188.194 kb on - strand, within Psest_2997at 3188.355 kb on + strandat 3188.361 kb on + strandat 3188.361 kb on + strandat 3188.361 kb on + strandat 3188.361 kb on + strandat 3188.362 kb on - strandat 3188.362 kb on - strandat 3188.365 kb on + strandat 3188.365 kb on + strandat 3188.365 kb on + strandat 3188.366 kb on - strandat 3188.366 kb on - strandat 3188.415 kb on + strandat 3188.415 kb on + strandat 3188.415 kb on + strandat 3188.415 kb on + strandat 3188.415 kb on + strandat 3188.415 kb on + strandat 3188.416 kb on - strandat 3188.416 kb on - strandat 3188.416 kb on - strandat 3188.416 kb on - strandat 3188.416 kb on - strandat 3188.416 kb on - strandat 3188.416 kb on - strandat 3188.416 kb on - strandat 3188.416 kb on - strandat 3188.416 kb on - strandat 3188.419 kb on - strandat 3188.427 kb on + strandat 3188.427 kb on + strandat 3188.467 kb on - strandat 3188.476 kb on - strandat 3188.476 kb on - strandat 3188.480 kb on + strandat 3188.480 kb on + strandat 3188.480 kb on + strandat 3188.480 kb on + strandat 3188.480 kb on + strandat 3188.480 kb on + strandat 3188.481 kb on - strandat 3188.481 kb on - strandat 3188.491 kb on + strandat 3188.491 kb on + strandat 3188.491 kb on + strandat 3188.491 kb on + strandat 3188.491 kb on + strandat 3188.492 kb on - strandat 3188.492 kb on - strandat 3188.492 kb on - strandat 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.626 kb on + strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.627 kb on - strand, within Psest_2998at 3188.743 kb on + strand, within Psest_2998at 3188.744 kb on - strand, within Psest_2998at 3188.752 kb on + strand, within Psest_2998at 3188.753 kb on - strand, within Psest_2998at 3188.842 kb on + strand, within Psest_2998at 3188.852 kb on - strand, within Psest_2998at 3188.910 kb on + strand, within Psest_2998at 3188.910 kb on + strand, within Psest_2998at 3188.911 kb on - strand, within Psest_2998at 3189.066 kb on - strandat 3189.066 kb on - strandat 3189.103 kb on + strandat 3189.181 kb on + strandat 3189.181 kb on + strandat 3189.181 kb on + strandat 3189.181 kb on + strandat 3189.255 kb on - strand, within Psest_2999at 3189.296 kb on + strand, within Psest_2999at 3189.296 kb on + strand, within Psest_2999at 3189.296 kb on + strand, within Psest_2999at 3189.409 kb on + strand, within Psest_2999at 3189.520 kb on + strand, within Psest_2999at 3189.520 kb on + strand, within Psest_2999at 3189.520 kb on + strand, within Psest_2999at 3189.520 kb on + strand, within Psest_2999at 3189.520 kb on + strand, within Psest_2999at 3189.521 kb on - strand, within Psest_2999at 3189.521 kb on - strand, within Psest_2999at 3189.521 kb on - strand, within Psest_2999at 3189.521 kb on - strand, within Psest_2999at 3189.733 kb on + strand, within Psest_2999at 3189.976 kb on + strandat 3189.977 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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3,187,549 - Psest_2997 0.26 -0.7
3,187,549 - Psest_2997 0.26 +1.1
3,187,551 + Psest_2997 0.27 +0.8
3,187,551 + Psest_2997 0.27 -1.3
3,187,551 + Psest_2997 0.27 +1.6
3,187,552 - Psest_2997 0.27 -1.7
3,187,552 - Psest_2997 0.27 +2.8
3,187,552 - Psest_2997 0.27 +0.8
3,187,552 - Psest_2997 0.27 -0.6
3,187,552 - Psest_2997 0.27 +0.3
3,187,594 + Psest_2997 0.30 -0.4
3,187,595 - Psest_2997 0.30 -1.4
3,187,596 + Psest_2997 0.30 +0.4
3,187,596 + Psest_2997 0.30 -2.0
3,187,596 + Psest_2997 0.30 -0.0
3,187,596 + Psest_2997 0.30 +0.3
3,187,596 + Psest_2997 0.30 +1.1
3,187,596 + Psest_2997 0.30 -1.9
3,187,596 + Psest_2997 0.30 -0.0
3,187,596 + Psest_2997 0.30 -0.2
3,187,596 + Psest_2997 0.30 +0.2
3,187,596 + Psest_2997 0.30 -0.8
3,187,596 + Psest_2997 0.30 -0.8
3,187,596 + Psest_2997 0.30 -0.4
3,187,596 + Psest_2997 0.30 -0.9
3,187,596 + Psest_2997 0.30 +0.6
3,187,596 + Psest_2997 0.30 -0.8
3,187,596 + Psest_2997 0.30 +0.2
3,187,596 + Psest_2997 0.30 -0.4
3,187,597 - Psest_2997 0.30 -1.2
3,187,597 - Psest_2997 0.30 -2.3
3,187,597 - Psest_2997 0.30 +0.7
3,187,597 - Psest_2997 0.30 +1.0
3,187,597 - Psest_2997 0.30 +0.3
3,187,597 - Psest_2997 0.30 -1.0
3,187,597 - Psest_2997 0.30 -0.4
3,187,597 - Psest_2997 0.30 -0.4
3,187,624 - Psest_2997 0.32 -2.0
3,187,659 + Psest_2997 0.35 +1.2
3,187,720 + Psest_2997 0.40 -1.3
3,187,831 + Psest_2997 0.49 +2.1
3,187,832 - Psest_2997 0.49 -0.4
3,187,832 - Psest_2997 0.49 +1.2
3,187,908 + Psest_2997 0.55 +0.3
3,187,909 - Psest_2997 0.55 +1.6
3,187,909 - Psest_2997 0.55 +1.6
3,187,926 - Psest_2997 0.56 +0.1
3,187,971 + Psest_2997 0.60 -3.1
3,187,971 + Psest_2997 0.60 +0.7
3,187,972 - Psest_2997 0.60 -1.3
3,188,052 + Psest_2997 0.66 -0.4
3,188,176 - Psest_2997 0.76 -1.4
3,188,176 - Psest_2997 0.76 -0.6
3,188,193 + Psest_2997 0.77 -1.1
3,188,194 - Psest_2997 0.78 -1.3
3,188,194 - Psest_2997 0.78 -0.3
3,188,355 + +1.1
3,188,361 + +3.9
3,188,361 + -0.0
3,188,361 + -0.8
3,188,361 + -0.0
3,188,362 - -0.4
3,188,362 - -1.0
3,188,365 + -1.0
3,188,365 + -0.3
3,188,365 + -0.0
3,188,366 - -2.4
3,188,366 - -1.4
3,188,415 + +1.6
3,188,415 + -1.3
3,188,415 + -0.0
3,188,415 + -1.6
3,188,415 + -0.4
3,188,415 + -0.8
3,188,416 - -0.5
3,188,416 - -0.9
3,188,416 - -1.7
3,188,416 - -2.3
3,188,416 - +0.4
3,188,416 - -2.8
3,188,416 - -0.7
3,188,416 - -2.3
3,188,416 - +0.5
3,188,416 - +0.6
3,188,419 - -1.4
3,188,427 + -0.8
3,188,427 + -0.9
3,188,467 - +0.0
3,188,476 - +1.6
3,188,476 - +0.7
3,188,480 + -1.0
3,188,480 + +0.3
3,188,480 + -0.8
3,188,480 + +1.2
3,188,480 + +0.1
3,188,480 + -0.8
3,188,481 - +0.5
3,188,481 - +4.4
3,188,491 + -1.6
3,188,491 + -1.6
3,188,491 + -1.0
3,188,491 + -3.3
3,188,491 + -0.8
3,188,492 - +0.8
3,188,492 - -2.3
3,188,492 - -2.4
3,188,626 + Psest_2998 0.19 +1.1
3,188,626 + Psest_2998 0.19 -0.3
3,188,626 + Psest_2998 0.19 +2.6
3,188,626 + Psest_2998 0.19 +1.1
3,188,626 + Psest_2998 0.19 +0.9
3,188,626 + Psest_2998 0.19 -0.4
3,188,626 + Psest_2998 0.19 +0.7
3,188,626 + Psest_2998 0.19 -0.4
3,188,626 + Psest_2998 0.19 +3.7
3,188,626 + Psest_2998 0.19 -0.6
3,188,626 + Psest_2998 0.19 +0.9
3,188,626 + Psest_2998 0.19 -0.4
3,188,626 + Psest_2998 0.19 -0.2
3,188,626 + Psest_2998 0.19 -0.4
3,188,626 + Psest_2998 0.19 -1.1
3,188,627 - Psest_2998 0.19 -1.4
3,188,627 - Psest_2998 0.19 -2.4
3,188,627 - Psest_2998 0.19 +0.8
3,188,627 - Psest_2998 0.19 +0.8
3,188,627 - Psest_2998 0.19 -0.3
3,188,627 - Psest_2998 0.19 -1.5
3,188,627 - Psest_2998 0.19 -0.9
3,188,627 - Psest_2998 0.19 -0.4
3,188,627 - Psest_2998 0.19 +0.6
3,188,627 - Psest_2998 0.19 -1.1
3,188,627 - Psest_2998 0.19 -0.4
3,188,627 - Psest_2998 0.19 -1.4
3,188,627 - Psest_2998 0.19 -0.0
3,188,627 - Psest_2998 0.19 +0.7
3,188,627 - Psest_2998 0.19 -0.9
3,188,627 - Psest_2998 0.19 -3.2
3,188,627 - Psest_2998 0.19 +0.1
3,188,627 - Psest_2998 0.19 +0.0
3,188,627 - Psest_2998 0.19 -1.8
3,188,743 + Psest_2998 0.40 +1.1
3,188,744 - Psest_2998 0.40 -0.9
3,188,752 + Psest_2998 0.42 -1.4
3,188,753 - Psest_2998 0.42 +0.4
3,188,842 + Psest_2998 0.58 +0.3
3,188,852 - Psest_2998 0.60 +0.6
3,188,910 + Psest_2998 0.70 +1.6
3,188,910 + Psest_2998 0.70 -1.0
3,188,911 - Psest_2998 0.71 +1.1
3,189,066 - +0.3
3,189,066 - +2.7
3,189,103 + -1.0
3,189,181 + +0.3
3,189,181 + -0.3
3,189,181 + -0.2
3,189,181 + -1.1
3,189,255 - Psest_2999 0.14 -1.8
3,189,296 + Psest_2999 0.19 -1.0
3,189,296 + Psest_2999 0.19 +0.4
3,189,296 + Psest_2999 0.19 -1.0
3,189,409 + Psest_2999 0.33 +1.0
3,189,520 + Psest_2999 0.46 -1.0
3,189,520 + Psest_2999 0.46 -1.7
3,189,520 + Psest_2999 0.46 -0.8
3,189,520 + Psest_2999 0.46 -1.4
3,189,520 + Psest_2999 0.46 -0.7
3,189,521 - Psest_2999 0.46 +0.9
3,189,521 - Psest_2999 0.46 +0.1
3,189,521 - Psest_2999 0.46 -0.5
3,189,521 - Psest_2999 0.46 +1.9
3,189,733 + Psest_2999 0.71 -1.4
3,189,976 + +1.5
3,189,977 - +2.7

Or see this region's nucleotide sequence