Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2735

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2733 and Psest_2735 are separated by 600 nucleotidesPsest_2735 and Psest_2736 are separated by 179 nucleotidesPsest_2736 and Psest_2737 are separated by 141 nucleotides Psest_2733: Psest_2733 - Uncharacterized protein conserved in bacteria (DUF2188)., at 2,925,152 to 2,925,376 _2733 Psest_2735: Psest_2735 - hypothetical protein, at 2,925,977 to 2,926,651 _2735 Psest_2736: Psest_2736 - Transposase and inactivated derivatives, at 2,926,831 to 2,927,361 _2736 Psest_2737: Psest_2737 - Restriction endonuclease, at 2,927,503 to 2,928,399 _2737 Position (kb) 2925 2926 2927Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2924.993 kb on - strandat 2925.044 kb on + strandat 2925.044 kb on + strandat 2925.045 kb on - strandat 2925.045 kb on - strandat 2925.045 kb on - strandat 2925.045 kb on - strandat 2925.045 kb on - strandat 2925.089 kb on - strandat 2925.111 kb on - strandat 2925.130 kb on + strandat 2925.130 kb on + strandat 2925.130 kb on + strandat 2925.131 kb on - strandat 2925.131 kb on - strandat 2925.131 kb on - strandat 2925.131 kb on - strandat 2925.144 kb on + strandat 2925.144 kb on + strandat 2925.144 kb on + strandat 2925.144 kb on + strandat 2925.144 kb on + strandat 2925.144 kb on + strandat 2925.144 kb on + strandat 2925.145 kb on - strandat 2925.145 kb on - strandat 2925.145 kb on - strandat 2925.148 kb on + strandat 2925.148 kb on + strandat 2925.148 kb on + strandat 2925.148 kb on + strandat 2925.148 kb on + strandat 2925.148 kb on + strandat 2925.149 kb on - strandat 2925.149 kb on - strandat 2925.191 kb on - strand, within Psest_2733at 2925.191 kb on - strand, within Psest_2733at 2925.191 kb on - strand, within Psest_2733at 2925.191 kb on - strand, within Psest_2733at 2925.191 kb on - strand, within Psest_2733at 2925.214 kb on + strand, within Psest_2733at 2925.220 kb on + strand, within Psest_2733at 2925.220 kb on + strand, within Psest_2733at 2925.220 kb on + strand, within Psest_2733at 2925.220 kb on + strand, within Psest_2733at 2925.220 kb on + strand, within Psest_2733at 2925.226 kb on + strand, within Psest_2733at 2925.227 kb on - strand, within Psest_2733at 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.389 kb on + strandat 2925.390 kb on - strandat 2925.390 kb on - strandat 2925.390 kb on - strandat 2925.390 kb on - strandat 2925.390 kb on - strandat 2925.390 kb on - strandat 2925.390 kb on - strandat 2925.390 kb on - strandat 2925.391 kb on + strandat 2925.391 kb on + strandat 2925.391 kb on + strandat 2925.391 kb on + strandat 2925.391 kb on + strandat 2925.391 kb on + strandat 2925.391 kb on + strandat 2925.391 kb on + strandat 2925.392 kb on - strandat 2925.392 kb on - strandat 2925.392 kb on - strandat 2925.392 kb on - strandat 2925.392 kb on - strandat 2925.392 kb on - strandat 2925.516 kb on + strandat 2925.721 kb on + strandat 2925.907 kb on + strandat 2925.931 kb on + strandat 2925.931 kb on + strandat 2925.932 kb on - strandat 2925.932 kb on - strandat 2925.932 kb on - strandat 2925.932 kb on - strandat 2925.932 kb on - strandat 2925.935 kb on + strandat 2925.935 kb on + strandat 2925.936 kb on - strandat 2925.936 kb on - strandat 2925.936 kb on - strandat 2925.936 kb on - strandat 2925.936 kb on - strandat 2925.954 kb on - strandat 2925.954 kb on - strandat 2926.047 kb on + strand, within Psest_2735at 2926.182 kb on + strand, within Psest_2735at 2926.182 kb on + strand, within Psest_2735at 2926.183 kb on - strand, within Psest_2735at 2926.183 kb on - strand, within Psest_2735at 2926.183 kb on - strand, within Psest_2735at 2926.189 kb on - strand, within Psest_2735at 2926.213 kb on + strand, within Psest_2735at 2926.214 kb on - strand, within Psest_2735at 2926.214 kb on - strand, within Psest_2735at 2926.217 kb on + strand, within Psest_2735at 2926.217 kb on + strand, within Psest_2735at 2926.218 kb on - strand, within Psest_2735at 2926.320 kb on - strand, within Psest_2735at 2926.320 kb on - strand, within Psest_2735at 2926.320 kb on - strand, within Psest_2735at 2926.320 kb on - strand, within Psest_2735at 2926.363 kb on + strand, within Psest_2735at 2926.363 kb on + strand, within Psest_2735at 2926.363 kb on + strand, within Psest_2735at 2926.363 kb on + strand, within Psest_2735at 2926.380 kb on - strand, within Psest_2735at 2926.380 kb on - strand, within Psest_2735at 2926.380 kb on - strand, within Psest_2735at 2926.380 kb on - strand, within Psest_2735at 2926.395 kb on - strand, within Psest_2735at 2926.395 kb on - strand, within Psest_2735at 2926.395 kb on - strand, within Psest_2735at 2926.395 kb on - strand, within Psest_2735at 2926.468 kb on + strand, within Psest_2735at 2926.478 kb on + strand, within Psest_2735at 2926.581 kb on + strand, within Psest_2735at 2926.582 kb on - strand, within Psest_2735at 2926.582 kb on - strand, within Psest_2735at 2926.646 kb on - strandat 2926.870 kb on + strandat 2926.870 kb on + strandat 2927.109 kb on - strand, within Psest_2736at 2927.213 kb on - strand, within Psest_2736at 2927.213 kb on - strand, within Psest_2736at 2927.213 kb on - strand, within Psest_2736at 2927.313 kb on + strandat 2927.393 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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2,924,993 - -0.4
2,925,044 + -3.1
2,925,044 + -0.8
2,925,045 - -2.1
2,925,045 - -0.4
2,925,045 - -2.0
2,925,045 - -2.5
2,925,045 - +3.6
2,925,089 - -0.7
2,925,111 - -1.1
2,925,130 + +0.1
2,925,130 + -0.9
2,925,130 + +2.9
2,925,131 - -0.1
2,925,131 - -0.2
2,925,131 - -1.0
2,925,131 - -2.9
2,925,144 + +0.4
2,925,144 + +1.0
2,925,144 + +2.4
2,925,144 + -0.6
2,925,144 + +0.3
2,925,144 + -1.6
2,925,144 + +1.1
2,925,145 - -0.3
2,925,145 - -0.1
2,925,145 - -0.5
2,925,148 + +0.9
2,925,148 + -0.8
2,925,148 + +3.1
2,925,148 + +1.0
2,925,148 + -0.2
2,925,148 + -2.4
2,925,149 - -3.3
2,925,149 - -2.6
2,925,191 - Psest_2733 0.17 -2.1
2,925,191 - Psest_2733 0.17 -0.4
2,925,191 - Psest_2733 0.17 -0.7
2,925,191 - Psest_2733 0.17 -0.5
2,925,191 - Psest_2733 0.17 +1.5
2,925,214 + Psest_2733 0.28 +0.3
2,925,220 + Psest_2733 0.30 -1.9
2,925,220 + Psest_2733 0.30 +0.3
2,925,220 + Psest_2733 0.30 +1.1
2,925,220 + Psest_2733 0.30 -0.7
2,925,220 + Psest_2733 0.30 +1.3
2,925,226 + Psest_2733 0.33 +0.9
2,925,227 - Psest_2733 0.33 +0.5
2,925,389 + -0.0
2,925,389 + -0.1
2,925,389 + -3.6
2,925,389 + -1.2
2,925,389 + +0.9
2,925,389 + -1.2
2,925,389 + +0.4
2,925,389 + -2.4
2,925,389 + -2.5
2,925,389 + -1.3
2,925,389 + -0.2
2,925,389 + -2.5
2,925,389 + +0.1
2,925,390 - +3.4
2,925,390 - +1.8
2,925,390 - -2.9
2,925,390 - -2.7
2,925,390 - -3.5
2,925,390 - -0.9
2,925,390 - +0.2
2,925,390 - -0.3
2,925,391 + -0.7
2,925,391 + -0.7
2,925,391 + -0.3
2,925,391 + +0.2
2,925,391 + -3.4
2,925,391 + -2.2
2,925,391 + -0.6
2,925,391 + -3.3
2,925,392 - -0.6
2,925,392 - -0.5
2,925,392 - +0.2
2,925,392 - -2.3
2,925,392 - +0.8
2,925,392 - +1.4
2,925,516 + -0.7
2,925,721 + -0.2
2,925,907 + +1.4
2,925,931 + +0.6
2,925,931 + +1.5
2,925,932 - +0.5
2,925,932 - +0.8
2,925,932 - -1.6
2,925,932 - +0.1
2,925,932 - +0.5
2,925,935 + -0.0
2,925,935 + -1.3
2,925,936 - +1.0
2,925,936 - -1.2
2,925,936 - -2.0
2,925,936 - +0.3
2,925,936 - +2.2
2,925,954 - +0.9
2,925,954 - +1.7
2,926,047 + Psest_2735 0.10 -0.1
2,926,182 + Psest_2735 0.30 +0.3
2,926,182 + Psest_2735 0.30 -1.8
2,926,183 - Psest_2735 0.31 -2.8
2,926,183 - Psest_2735 0.31 -2.9
2,926,183 - Psest_2735 0.31 +1.1
2,926,189 - Psest_2735 0.31 -1.2
2,926,213 + Psest_2735 0.35 +1.6
2,926,214 - Psest_2735 0.35 +0.7
2,926,214 - Psest_2735 0.35 +0.8
2,926,217 + Psest_2735 0.36 -2.4
2,926,217 + Psest_2735 0.36 +1.0
2,926,218 - Psest_2735 0.36 +4.5
2,926,320 - Psest_2735 0.51 -0.3
2,926,320 - Psest_2735 0.51 +2.4
2,926,320 - Psest_2735 0.51 +0.7
2,926,320 - Psest_2735 0.51 +0.6
2,926,363 + Psest_2735 0.57 -0.9
2,926,363 + Psest_2735 0.57 +0.2
2,926,363 + Psest_2735 0.57 -0.3
2,926,363 + Psest_2735 0.57 +0.9
2,926,380 - Psest_2735 0.60 +1.6
2,926,380 - Psest_2735 0.60 +0.2
2,926,380 - Psest_2735 0.60 -0.6
2,926,380 - Psest_2735 0.60 +1.7
2,926,395 - Psest_2735 0.62 +0.4
2,926,395 - Psest_2735 0.62 +0.7
2,926,395 - Psest_2735 0.62 +0.5
2,926,395 - Psest_2735 0.62 +0.6
2,926,468 + Psest_2735 0.73 +2.1
2,926,478 + Psest_2735 0.74 -1.8
2,926,581 + Psest_2735 0.89 -0.8
2,926,582 - Psest_2735 0.90 -0.2
2,926,582 - Psest_2735 0.90 +1.1
2,926,646 - +0.9
2,926,870 + +0.9
2,926,870 + +1.0
2,927,109 - Psest_2736 0.52 +0.2
2,927,213 - Psest_2736 0.72 +2.0
2,927,213 - Psest_2736 0.72 -0.2
2,927,213 - Psest_2736 0.72 -0.1
2,927,313 + -1.4
2,927,393 - -0.7

Or see this region's nucleotide sequence