Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_2472

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_2471 and Psest_2472 are separated by 430 nucleotidesPsest_2472 and Psest_2473 are separated by 11 nucleotides Psest_2471: Psest_2471 - Glycerol-3-phosphate dehydrogenase, at 2,640,446 to 2,641,468 _2471 Psest_2472: Psest_2472 - beta-hydroxyacyl-[acyl carrier protein] dehydratase FabA, at 2,641,899 to 2,642,414 _2472 Psest_2473: Psest_2473 - 3-oxoacyl-(acyl-carrier-protein) synthase, at 2,642,426 to 2,643,643 _2473 Position (kb) 2641 2642 2643Strain fitness (log2 ratio) -2 -1 0 1 2at 2641.514 kb on + strandat 2641.514 kb on + strandat 2641.514 kb on + strandat 2641.514 kb on + strandat 2641.514 kb on + strandat 2641.514 kb on + strandat 2641.515 kb on - strandat 2641.515 kb on - strandat 2641.515 kb on - strandat 2641.515 kb on - strandat 2641.515 kb on - strandat 2641.661 kb on + strandat 2641.662 kb on - strandat 2641.663 kb on + strandat 2641.709 kb on + strandat 2641.811 kb on + strandat 2641.811 kb on + strandat 2641.811 kb on + strandat 2641.811 kb on + strandat 2641.817 kb on + strandat 2641.817 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strandat 2641.856 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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2,641,514 + +0.2
2,641,514 + +0.2
2,641,514 + -1.8
2,641,514 + +0.6
2,641,514 + +0.7
2,641,514 + -0.7
2,641,515 - +0.7
2,641,515 - +0.5
2,641,515 - -1.2
2,641,515 - -0.2
2,641,515 - -0.4
2,641,661 + +2.0
2,641,662 - +1.6
2,641,663 + +1.0
2,641,709 + -0.3
2,641,811 + +1.5
2,641,811 + +0.6
2,641,811 + +0.7
2,641,811 + +0.9
2,641,817 + +1.2
2,641,817 + +0.8
2,641,856 + +2.3
2,641,856 + -1.5
2,641,856 + +2.3
2,641,856 + -2.7
2,641,856 + -0.1
2,641,856 + +2.1
2,641,856 + +2.6

Or see this region's nucleotide sequence