Strain Fitness in Marinobacter adhaerens HP15 around HP15_2323

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2320 and HP15_2321 are separated by 24 nucleotidesHP15_2321 and HP15_2322 are separated by 122 nucleotidesHP15_2322 and HP15_2323 overlap by 1 nucleotidesHP15_2323 and HP15_2324 overlap by 20 nucleotidesHP15_2324 and HP15_2325 overlap by 4 nucleotides HP15_2320: HP15_2320 - response regulator receiver protein, at 2,438,918 to 2,440,675 _2320 HP15_2321: HP15_2321 - anti-sigma-factor antagonist, at 2,440,700 to 2,441,005 _2321 HP15_2322: HP15_2322 - flagellar FliJ protein, at 2,441,128 to 2,441,571 _2322 HP15_2323: HP15_2323 - flagellum-specific ATP synthase FliI, at 2,441,571 to 2,442,965 _2323 HP15_2324: HP15_2324 - flagellar assembly protein H, at 2,442,946 to 2,443,842 _2324 HP15_2325: HP15_2325 - flagellar motor switch protein G, at 2,443,839 to 2,444,882 _2325 Position (kb) 2441 2442 2443Strain fitness (log2 ratio) -1 0 1 2at 2440.650 kb on - strandat 2440.725 kb on + strandat 2440.742 kb on + strand, within HP15_2321at 2440.903 kb on + strand, within HP15_2321at 2441.058 kb on + strandat 2441.066 kb on - strandat 2441.074 kb on + strandat 2441.362 kb on - strand, within HP15_2322at 2441.388 kb on + strand, within HP15_2322at 2441.396 kb on - strand, within HP15_2322at 2441.510 kb on - strand, within HP15_2322at 2441.529 kb on + strandat 2441.529 kb on + strandat 2441.537 kb on - strandat 2441.545 kb on - strandat 2441.632 kb on - strandat 2441.699 kb on + strandat 2441.818 kb on - strand, within HP15_2323at 2441.919 kb on + strand, within HP15_2323at 2442.027 kb on + strand, within HP15_2323at 2442.033 kb on - strand, within HP15_2323at 2442.033 kb on - strand, within HP15_2323at 2442.139 kb on + strand, within HP15_2323at 2442.147 kb on - strand, within HP15_2323at 2442.353 kb on + strand, within HP15_2323at 2442.361 kb on - strand, within HP15_2323at 2442.391 kb on - strand, within HP15_2323at 2442.396 kb on + strand, within HP15_2323at 2442.474 kb on + strand, within HP15_2323at 2442.493 kb on - strand, within HP15_2323at 2442.723 kb on - strand, within HP15_2323at 2442.764 kb on + strand, within HP15_2323at 2442.801 kb on + strand, within HP15_2323at 2442.812 kb on + strand, within HP15_2323at 2442.836 kb on + strandat 2442.844 kb on - strandat 2442.904 kb on - strandat 2442.961 kb on - strandat 2443.080 kb on - strand, within HP15_2324at 2443.134 kb on - strand, within HP15_2324at 2443.209 kb on + strand, within HP15_2324at 2443.281 kb on + strand, within HP15_2324at 2443.316 kb on + strand, within HP15_2324at 2443.380 kb on + strand, within HP15_2324at 2443.380 kb on + strand, within HP15_2324at 2443.385 kb on + strand, within HP15_2324at 2443.385 kb on + strand, within HP15_2324at 2443.402 kb on + strand, within HP15_2324at 2443.402 kb on + strand, within HP15_2324at 2443.410 kb on - strand, within HP15_2324at 2443.415 kb on - strand, within HP15_2324at 2443.432 kb on + strand, within HP15_2324at 2443.480 kb on + strand, within HP15_2324at 2443.502 kb on + strand, within HP15_2324at 2443.556 kb on + strand, within HP15_2324at 2443.556 kb on + strand, within HP15_2324at 2443.557 kb on + strand, within HP15_2324at 2443.597 kb on + strand, within HP15_2324at 2443.628 kb on + strand, within HP15_2324at 2443.650 kb on + strand, within HP15_2324at 2443.708 kb on - strand, within HP15_2324at 2443.717 kb on - strand, within HP15_2324at 2443.870 kb on - strandat 2443.896 kb on - strandat 2443.927 kb on + strandat 2443.955 kb on - strand, within HP15_2325

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,440,650 - -1.5
2,440,725 + -0.5
2,440,742 + HP15_2321 0.14 +0.8
2,440,903 + HP15_2321 0.66 +1.6
2,441,058 + -0.2
2,441,066 - -0.1
2,441,074 + +1.8
2,441,362 - HP15_2322 0.53 +1.8
2,441,388 + HP15_2322 0.59 +1.7
2,441,396 - HP15_2322 0.60 +1.8
2,441,510 - HP15_2322 0.86 +1.6
2,441,529 + +1.7
2,441,529 + +1.8
2,441,537 - +1.6
2,441,545 - +0.9
2,441,632 - +0.8
2,441,699 + +2.0
2,441,818 - HP15_2323 0.18 +1.7
2,441,919 + HP15_2323 0.25 +1.4
2,442,027 + HP15_2323 0.33 +1.4
2,442,033 - HP15_2323 0.33 +0.8
2,442,033 - HP15_2323 0.33 +1.0
2,442,139 + HP15_2323 0.41 +1.4
2,442,147 - HP15_2323 0.41 +1.6
2,442,353 + HP15_2323 0.56 +1.6
2,442,361 - HP15_2323 0.57 +2.5
2,442,391 - HP15_2323 0.59 +1.7
2,442,396 + HP15_2323 0.59 +1.1
2,442,474 + HP15_2323 0.65 +2.1
2,442,493 - HP15_2323 0.66 +1.4
2,442,723 - HP15_2323 0.83 +2.7
2,442,764 + HP15_2323 0.86 +1.5
2,442,801 + HP15_2323 0.88 +1.9
2,442,812 + HP15_2323 0.89 +1.8
2,442,836 + +1.8
2,442,844 - +1.5
2,442,904 - +1.8
2,442,961 - +1.6
2,443,080 - HP15_2324 0.15 +0.0
2,443,134 - HP15_2324 0.21 +1.6
2,443,209 + HP15_2324 0.29 +1.7
2,443,281 + HP15_2324 0.37 +1.7
2,443,316 + HP15_2324 0.41 +1.3
2,443,380 + HP15_2324 0.48 +1.4
2,443,380 + HP15_2324 0.48 +1.5
2,443,385 + HP15_2324 0.49 +1.7
2,443,385 + HP15_2324 0.49 +1.9
2,443,402 + HP15_2324 0.51 +2.3
2,443,402 + HP15_2324 0.51 +2.5
2,443,410 - HP15_2324 0.52 +1.3
2,443,415 - HP15_2324 0.52 +1.6
2,443,432 + HP15_2324 0.54 +2.2
2,443,480 + HP15_2324 0.60 +1.6
2,443,502 + HP15_2324 0.62 +1.5
2,443,556 + HP15_2324 0.68 +1.7
2,443,556 + HP15_2324 0.68 +1.7
2,443,557 + HP15_2324 0.68 +1.6
2,443,597 + HP15_2324 0.73 +1.6
2,443,628 + HP15_2324 0.76 +1.5
2,443,650 + HP15_2324 0.78 +2.1
2,443,708 - HP15_2324 0.85 +2.0
2,443,717 - HP15_2324 0.86 +1.5
2,443,870 - -0.4
2,443,896 - +1.2
2,443,927 + +1.9
2,443,955 - HP15_2325 0.11 +1.6

Or see this region's nucleotide sequence