Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_2320 and HP15_2321 are separated by 24 nucleotides HP15_2321 and HP15_2322 are separated by 122 nucleotides HP15_2322 and HP15_2323 overlap by 1 nucleotides HP15_2323 and HP15_2324 overlap by 20 nucleotides HP15_2324 and HP15_2325 overlap by 4 nucleotides
HP15_2320: HP15_2320 - response regulator receiver protein, at 2,438,918 to 2,440,675
_2320
HP15_2321: HP15_2321 - anti-sigma-factor antagonist, at 2,440,700 to 2,441,005
_2321
HP15_2322: HP15_2322 - flagellar FliJ protein, at 2,441,128 to 2,441,571
_2322
HP15_2323: HP15_2323 - flagellum-specific ATP synthase FliI, at 2,441,571 to 2,442,965
_2323
HP15_2324: HP15_2324 - flagellar assembly protein H, at 2,442,946 to 2,443,842
_2324
HP15_2325: HP15_2325 - flagellar motor switch protein G, at 2,443,839 to 2,444,882
_2325
Position (kb)
2441
2442
2443 Strain fitness (log2 ratio)
-1
0
1
2 at 2440.650 kb on - strand at 2440.725 kb on + strand at 2440.742 kb on + strand, within HP15_2321 at 2440.903 kb on + strand, within HP15_2321 at 2441.058 kb on + strand at 2441.066 kb on - strand at 2441.074 kb on + strand at 2441.362 kb on - strand, within HP15_2322 at 2441.388 kb on + strand, within HP15_2322 at 2441.396 kb on - strand, within HP15_2322 at 2441.510 kb on - strand, within HP15_2322 at 2441.529 kb on + strand at 2441.529 kb on + strand at 2441.537 kb on - strand at 2441.545 kb on - strand at 2441.632 kb on - strand at 2441.699 kb on + strand at 2441.818 kb on - strand, within HP15_2323 at 2441.919 kb on + strand, within HP15_2323 at 2442.027 kb on + strand, within HP15_2323 at 2442.033 kb on - strand, within HP15_2323 at 2442.033 kb on - strand, within HP15_2323 at 2442.139 kb on + strand, within HP15_2323 at 2442.147 kb on - strand, within HP15_2323 at 2442.353 kb on + strand, within HP15_2323 at 2442.361 kb on - strand, within HP15_2323 at 2442.391 kb on - strand, within HP15_2323 at 2442.396 kb on + strand, within HP15_2323 at 2442.474 kb on + strand, within HP15_2323 at 2442.493 kb on - strand, within HP15_2323 at 2442.723 kb on - strand, within HP15_2323 at 2442.764 kb on + strand, within HP15_2323 at 2442.801 kb on + strand, within HP15_2323 at 2442.812 kb on + strand, within HP15_2323 at 2442.836 kb on + strand at 2442.844 kb on - strand at 2442.904 kb on - strand at 2442.961 kb on - strand at 2443.080 kb on - strand, within HP15_2324 at 2443.134 kb on - strand, within HP15_2324 at 2443.209 kb on + strand, within HP15_2324 at 2443.281 kb on + strand, within HP15_2324 at 2443.316 kb on + strand, within HP15_2324 at 2443.380 kb on + strand, within HP15_2324 at 2443.380 kb on + strand, within HP15_2324 at 2443.385 kb on + strand, within HP15_2324 at 2443.385 kb on + strand, within HP15_2324 at 2443.402 kb on + strand, within HP15_2324 at 2443.402 kb on + strand, within HP15_2324 at 2443.410 kb on - strand, within HP15_2324 at 2443.415 kb on - strand, within HP15_2324 at 2443.432 kb on + strand, within HP15_2324 at 2443.480 kb on + strand, within HP15_2324 at 2443.502 kb on + strand, within HP15_2324 at 2443.556 kb on + strand, within HP15_2324 at 2443.556 kb on + strand, within HP15_2324 at 2443.557 kb on + strand, within HP15_2324 at 2443.597 kb on + strand, within HP15_2324 at 2443.628 kb on + strand, within HP15_2324 at 2443.650 kb on + strand, within HP15_2324 at 2443.708 kb on - strand, within HP15_2324 at 2443.717 kb on - strand, within HP15_2324 at 2443.870 kb on - strand at 2443.896 kb on - strand at 2443.927 kb on + strand at 2443.955 kb on - strand, within HP15_2325
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,440,650 - -1.5 2,440,725 + -0.5 2,440,742 + HP15_2321 0.14 +0.8 2,440,903 + HP15_2321 0.66 +1.6 2,441,058 + -0.2 2,441,066 - -0.1 2,441,074 + +1.8 2,441,362 - HP15_2322 0.53 +1.8 2,441,388 + HP15_2322 0.59 +1.7 2,441,396 - HP15_2322 0.60 +1.8 2,441,510 - HP15_2322 0.86 +1.6 2,441,529 + +1.7 2,441,529 + +1.8 2,441,537 - +1.6 2,441,545 - +0.9 2,441,632 - +0.8 2,441,699 + +2.0 2,441,818 - HP15_2323 0.18 +1.7 2,441,919 + HP15_2323 0.25 +1.4 2,442,027 + HP15_2323 0.33 +1.4 2,442,033 - HP15_2323 0.33 +0.8 2,442,033 - HP15_2323 0.33 +1.0 2,442,139 + HP15_2323 0.41 +1.4 2,442,147 - HP15_2323 0.41 +1.6 2,442,353 + HP15_2323 0.56 +1.6 2,442,361 - HP15_2323 0.57 +2.5 2,442,391 - HP15_2323 0.59 +1.7 2,442,396 + HP15_2323 0.59 +1.1 2,442,474 + HP15_2323 0.65 +2.1 2,442,493 - HP15_2323 0.66 +1.4 2,442,723 - HP15_2323 0.83 +2.7 2,442,764 + HP15_2323 0.86 +1.5 2,442,801 + HP15_2323 0.88 +1.9 2,442,812 + HP15_2323 0.89 +1.8 2,442,836 + +1.8 2,442,844 - +1.5 2,442,904 - +1.8 2,442,961 - +1.6 2,443,080 - HP15_2324 0.15 +0.0 2,443,134 - HP15_2324 0.21 +1.6 2,443,209 + HP15_2324 0.29 +1.7 2,443,281 + HP15_2324 0.37 +1.7 2,443,316 + HP15_2324 0.41 +1.3 2,443,380 + HP15_2324 0.48 +1.4 2,443,380 + HP15_2324 0.48 +1.5 2,443,385 + HP15_2324 0.49 +1.7 2,443,385 + HP15_2324 0.49 +1.9 2,443,402 + HP15_2324 0.51 +2.3 2,443,402 + HP15_2324 0.51 +2.5 2,443,410 - HP15_2324 0.52 +1.3 2,443,415 - HP15_2324 0.52 +1.6 2,443,432 + HP15_2324 0.54 +2.2 2,443,480 + HP15_2324 0.60 +1.6 2,443,502 + HP15_2324 0.62 +1.5 2,443,556 + HP15_2324 0.68 +1.7 2,443,556 + HP15_2324 0.68 +1.7 2,443,557 + HP15_2324 0.68 +1.6 2,443,597 + HP15_2324 0.73 +1.6 2,443,628 + HP15_2324 0.76 +1.5 2,443,650 + HP15_2324 0.78 +2.1 2,443,708 - HP15_2324 0.85 +2.0 2,443,717 - HP15_2324 0.86 +1.5 2,443,870 - -0.4 2,443,896 - +1.2 2,443,927 + +1.9 2,443,955 - HP15_2325 0.11 +1.6
Or see this region's nucleotide sequence