Strain Fitness in Marinobacter adhaerens HP15 around HP15_2265

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_2263 and HP15_2264 are separated by 273 nucleotidesHP15_2264 and HP15_2265 are separated by 13 nucleotidesHP15_2265 and HP15_2266 are separated by 156 nucleotides HP15_2263: HP15_2263 - conserved hypothetical protein, membrane, at 2,384,112 to 2,384,915 _2263 HP15_2264: HP15_2264 - riboflavin synthase subunit alpha, at 2,385,189 to 2,385,809 _2264 HP15_2265: HP15_2265 - rRNA (guanine-N2-)-methyltransferase, RsmD, at 2,385,823 to 2,386,980 _2265 HP15_2266: HP15_2266 - rRNA (guanine-N(2)-)-methyltransferase, at 2,387,137 to 2,388,183 _2266 Position (kb) 2385 2386 2387Strain fitness (log2 ratio) -2 -1 0 1 2at 2384.937 kb on - strandat 2384.954 kb on + strandat 2384.954 kb on + strandat 2384.955 kb on - strandat 2385.780 kb on + strandat 2385.788 kb on - strandat 2385.853 kb on + strandat 2385.954 kb on + strand, within HP15_2265at 2386.471 kb on + strand, within HP15_2265at 2386.473 kb on + strand, within HP15_2265at 2386.503 kb on + strand, within HP15_2265at 2386.575 kb on + strand, within HP15_2265at 2386.781 kb on - strand, within HP15_2265at 2386.793 kb on + strand, within HP15_2265at 2386.801 kb on - strand, within HP15_2265at 2387.105 kb on + strandat 2387.113 kb on - strandat 2387.336 kb on + strand, within HP15_2266at 2387.366 kb on - strand, within HP15_2266at 2387.402 kb on + strand, within HP15_2266at 2387.402 kb on + strand, within HP15_2266at 2387.410 kb on - strand, within HP15_2266at 2387.435 kb on + strand, within HP15_2266at 2387.438 kb on - strand, within HP15_2266at 2387.450 kb on - strand, within HP15_2266at 2387.496 kb on + strand, within HP15_2266at 2387.589 kb on - strand, within HP15_2266at 2387.706 kb on + strand, within HP15_2266at 2387.767 kb on - strand, within HP15_2266at 2387.813 kb on + strand, within HP15_2266at 2387.813 kb on + strand, within HP15_2266at 2387.813 kb on + strand, within HP15_2266at 2387.821 kb on - strand, within HP15_2266at 2387.886 kb on + strand, within HP15_2266at 2387.935 kb on - strand, within HP15_2266at 2387.979 kb on + strand, within HP15_2266

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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2,384,937 - -0.8
2,384,954 + +0.1
2,384,954 + +1.9
2,384,955 - -0.2
2,385,780 + +0.8
2,385,788 - -0.2
2,385,853 + -0.2
2,385,954 + HP15_2265 0.11 -0.3
2,386,471 + HP15_2265 0.56 -0.4
2,386,473 + HP15_2265 0.56 -0.6
2,386,503 + HP15_2265 0.59 -0.3
2,386,575 + HP15_2265 0.65 +1.1
2,386,781 - HP15_2265 0.83 -0.7
2,386,793 + HP15_2265 0.84 -0.2
2,386,801 - HP15_2265 0.84 -0.1
2,387,105 + -0.7
2,387,113 - -0.4
2,387,336 + HP15_2266 0.19 -0.6
2,387,366 - HP15_2266 0.22 -2.1
2,387,402 + HP15_2266 0.25 +1.7
2,387,402 + HP15_2266 0.25 +0.4
2,387,410 - HP15_2266 0.26 +1.2
2,387,435 + HP15_2266 0.28 +1.8
2,387,438 - HP15_2266 0.29 +0.8
2,387,450 - HP15_2266 0.30 +1.3
2,387,496 + HP15_2266 0.34 -0.1
2,387,589 - HP15_2266 0.43 +0.4
2,387,706 + HP15_2266 0.54 -0.8
2,387,767 - HP15_2266 0.60 +0.3
2,387,813 + HP15_2266 0.65 -0.5
2,387,813 + HP15_2266 0.65 +1.7
2,387,813 + HP15_2266 0.65 -0.0
2,387,821 - HP15_2266 0.65 -1.7
2,387,886 + HP15_2266 0.72 -0.9
2,387,935 - HP15_2266 0.76 -0.3
2,387,979 + HP15_2266 0.80 -0.4

Or see this region's nucleotide sequence