Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0002

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0001 and Psest_0002 are separated by 514 nucleotidesPsest_0002 and Psest_0003 are separated by 33 nucleotides Psest_0001: Psest_0001 - ribosomal protein L34, bacterial type, at 12 to 146 _0001 Psest_0002: Psest_0002 - chromosomal replication initiator protein DnaA, at 661 to 2,109 _0002 Psest_0003: Psest_0003 - DNA polymerase III, beta subunit, at 2,143 to 3,246 _0003 Position (kb) 0 1 2 3Strain fitness (log2 ratio) -1 0 1 2at 0.300 kb on - strandat 0.300 kb on - strandat 0.315 kb on - strandat 0.315 kb on - strandat 0.401 kb on - strandat 0.401 kb on - strandat 0.423 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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300 - -0.9
300 - -1.7
315 - +0.4
315 - +2.4
401 - +1.9
401 - +0.2
423 - +2.5

Or see this region's nucleotide sequence