Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1909 and HP15_1910 are separated by 455 nucleotides HP15_1910 and HP15_1911 are separated by 39 nucleotides
HP15_1909: HP15_1909 - fibronectin, type III domain protein-like protein, at 2,020,093 to 2,021,283
_1909
HP15_1910: HP15_1910 - TPR/glycosyl transferase domain protein, at 2,021,739 to 2,023,139
_1910
HP15_1911: HP15_1911 - beta 1,4-N-acetylgalactosaminyltransferase-transferase-III-like protein, at 2,023,179 to 2,025,203
_1911
Position (kb)
2021
2022
2023
2024 Strain fitness (log2 ratio)
-1
0
1
2
3 at 2020.828 kb on - strand, within HP15_1909 at 2021.037 kb on + strand, within HP15_1909 at 2021.329 kb on + strand at 2021.420 kb on + strand at 2021.428 kb on - strand at 2021.491 kb on - strand at 2021.560 kb on - strand at 2021.595 kb on - strand at 2021.772 kb on + strand at 2021.950 kb on - strand, within HP15_1910 at 2022.069 kb on - strand, within HP15_1910 at 2022.163 kb on + strand, within HP15_1910 at 2022.273 kb on - strand, within HP15_1910 at 2022.405 kb on - strand, within HP15_1910 at 2022.437 kb on + strand, within HP15_1910 at 2022.440 kb on - strand, within HP15_1910 at 2022.447 kb on + strand, within HP15_1910 at 2022.652 kb on - strand, within HP15_1910 at 2022.764 kb on - strand, within HP15_1910 at 2022.859 kb on + strand at 2022.941 kb on - strand, within HP15_1910 at 2022.979 kb on + strand, within HP15_1910 at 2023.100 kb on - strand at 2023.133 kb on + strand at 2023.188 kb on + strand at 2023.269 kb on + strand at 2023.306 kb on - strand at 2023.408 kb on - strand, within HP15_1911 at 2023.415 kb on + strand, within HP15_1911 at 2023.415 kb on + strand, within HP15_1911 at 2023.556 kb on + strand, within HP15_1911 at 2023.575 kb on - strand, within HP15_1911 at 2023.610 kb on - strand, within HP15_1911 at 2023.642 kb on - strand, within HP15_1911 at 2023.776 kb on - strand, within HP15_1911 at 2023.845 kb on - strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.872 kb on + strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2023.880 kb on - strand, within HP15_1911 at 2024.036 kb on - strand, within HP15_1911 at 2024.128 kb on + strand, within HP15_1911
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 2,020,828 - HP15_1909 0.62 -0.4 2,021,037 + HP15_1909 0.79 -0.4 2,021,329 + -0.2 2,021,420 + -1.4 2,021,428 - -0.6 2,021,491 - -0.1 2,021,560 - +1.7 2,021,595 - +1.9 2,021,772 + +1.5 2,021,950 - HP15_1910 0.15 +1.9 2,022,069 - HP15_1910 0.24 -0.2 2,022,163 + HP15_1910 0.30 +3.0 2,022,273 - HP15_1910 0.38 -1.1 2,022,405 - HP15_1910 0.48 +2.1 2,022,437 + HP15_1910 0.50 -0.1 2,022,440 - HP15_1910 0.50 +0.3 2,022,447 + HP15_1910 0.51 -0.5 2,022,652 - HP15_1910 0.65 +1.8 2,022,764 - HP15_1910 0.73 -0.4 2,022,859 + +3.5 2,022,941 - HP15_1910 0.86 -0.4 2,022,979 + HP15_1910 0.89 -0.1 2,023,100 - -0.6 2,023,133 + -1.0 2,023,188 + -1.6 2,023,269 + -0.9 2,023,306 - -0.9 2,023,408 - HP15_1911 0.11 -1.2 2,023,415 + HP15_1911 0.12 +0.5 2,023,415 + HP15_1911 0.12 +1.7 2,023,556 + HP15_1911 0.19 -0.2 2,023,575 - HP15_1911 0.20 -0.1 2,023,610 - HP15_1911 0.21 -0.3 2,023,642 - HP15_1911 0.23 -0.9 2,023,776 - HP15_1911 0.29 -0.8 2,023,845 - HP15_1911 0.33 +1.0 2,023,872 + HP15_1911 0.34 -1.1 2,023,872 + HP15_1911 0.34 +0.2 2,023,872 + HP15_1911 0.34 +2.1 2,023,872 + HP15_1911 0.34 -0.3 2,023,872 + HP15_1911 0.34 +1.6 2,023,880 - HP15_1911 0.35 -0.5 2,023,880 - HP15_1911 0.35 +2.4 2,023,880 - HP15_1911 0.35 +1.7 2,023,880 - HP15_1911 0.35 -0.5 2,024,036 - HP15_1911 0.42 -0.4 2,024,128 + HP15_1911 0.47 -0.8
Or see this region's nucleotide sequence