Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1887

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1885 and Psest_1886 are separated by 75 nucleotidesPsest_1886 and Psest_1887 are separated by 404 nucleotidesPsest_1887 and Psest_1888 are separated by 13 nucleotidesPsest_1888 and Psest_1889 are separated by 46 nucleotides Psest_1885: Psest_1885 - hypothetical protein, at 1,995,024 to 1,995,401 _1885 Psest_1886: Psest_1886 - Uncharacterized protein conserved in bacteria, at 1,995,477 to 1,995,776 _1886 Psest_1887: Psest_1887 - Predicted metal-dependent phosphoesterases (PHP family), at 1,996,181 to 1,997,047 _1887 Psest_1888: Psest_1888 - Sua5/YciO/YrdC/YwlC family protein, at 1,997,061 to 1,997,684 _1888 Psest_1889: Psest_1889 - tryptophanyl-tRNA synthetase, at 1,997,731 to 1,998,945 _1889 Position (kb) 1996 1997 1998Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1995.210 kb on + strand, within Psest_1885at 1995.316 kb on + strand, within Psest_1885at 1995.317 kb on - strand, within Psest_1885at 1995.317 kb on - strand, within Psest_1885at 1995.346 kb on - strand, within Psest_1885at 1995.346 kb on - strand, within Psest_1885at 1995.412 kb on - strandat 1995.420 kb on - strandat 1995.459 kb on - strandat 1995.510 kb on + strand, within Psest_1886at 1995.511 kb on - strand, within Psest_1886at 1995.534 kb on + strand, within Psest_1886at 1995.535 kb on - strand, within Psest_1886at 1995.536 kb on + strand, within Psest_1886at 1995.537 kb on - strand, within Psest_1886at 1995.537 kb on - strand, within Psest_1886at 1995.537 kb on - strand, within Psest_1886at 1995.537 kb on - strand, within Psest_1886at 1995.538 kb on + strand, within Psest_1886at 1995.538 kb on + strand, within Psest_1886at 1995.538 kb on + strand, within Psest_1886at 1995.539 kb on - strand, within Psest_1886at 1995.539 kb on - strand, within Psest_1886at 1995.539 kb on - strand, within Psest_1886at 1995.769 kb on + strandat 1995.809 kb on - strandat 1995.824 kb on - strandat 1995.909 kb on - strandat 1996.108 kb on + strandat 1996.175 kb on + strandat 1996.178 kb on + strandat 1996.178 kb on + strandat 1996.178 kb on + strandat 1996.178 kb on + strandat 1996.178 kb on + strandat 1996.245 kb on + strandat 1996.381 kb on - strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.404 kb on + strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887at 1996.405 kb on - strand, within Psest_1887at 1996.897 kb on - strand, within Psest_1887at 1997.564 kb on - strand, within Psest_1888at 1997.642 kb on - strandat 1997.642 kb on - strandat 1997.711 kb on + strandat 1997.712 kb on - strandat 1997.712 kb on - strandat 1997.712 kb on - strandat 1997.718 kb on + strandat 1997.718 kb on + strandat 1997.719 kb on - strandat 1997.719 kb on - strandat 1997.803 kb on + strandat 1997.803 kb on + strandat 1997.932 kb on - strand, within Psest_1889at 1997.981 kb on + strand, within Psest_1889

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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1,995,210 + Psest_1885 0.49 -1.0
1,995,316 + Psest_1885 0.77 +0.3
1,995,317 - Psest_1885 0.78 -0.3
1,995,317 - Psest_1885 0.78 -1.3
1,995,346 - Psest_1885 0.85 -0.7
1,995,346 - Psest_1885 0.85 +1.1
1,995,412 - -1.3
1,995,420 - -1.0
1,995,459 - -1.5
1,995,510 + Psest_1886 0.11 -2.0
1,995,511 - Psest_1886 0.11 -0.9
1,995,534 + Psest_1886 0.19 +3.3
1,995,535 - Psest_1886 0.19 -1.7
1,995,536 + Psest_1886 0.20 -0.7
1,995,537 - Psest_1886 0.20 +0.3
1,995,537 - Psest_1886 0.20 +0.6
1,995,537 - Psest_1886 0.20 +2.5
1,995,537 - Psest_1886 0.20 +1.9
1,995,538 + Psest_1886 0.20 -0.0
1,995,538 + Psest_1886 0.20 -1.7
1,995,538 + Psest_1886 0.20 +2.7
1,995,539 - Psest_1886 0.21 -0.3
1,995,539 - Psest_1886 0.21 +0.5
1,995,539 - Psest_1886 0.21 +0.9
1,995,769 + -1.4
1,995,809 - -1.7
1,995,824 - -0.4
1,995,909 - +1.3
1,996,108 + -0.3
1,996,175 + -0.9
1,996,178 + -0.3
1,996,178 + +0.0
1,996,178 + +1.3
1,996,178 + +0.8
1,996,178 + +0.7
1,996,245 + +2.6
1,996,381 - Psest_1887 0.23 +2.0
1,996,404 + Psest_1887 0.26 +0.3
1,996,404 + Psest_1887 0.26 -0.4
1,996,404 + Psest_1887 0.26 -0.3
1,996,404 + Psest_1887 0.26 +2.1
1,996,404 + Psest_1887 0.26 -0.1
1,996,404 + Psest_1887 0.26 -0.3
1,996,404 + Psest_1887 0.26 +1.6
1,996,405 - Psest_1887 0.26 +1.3
1,996,405 - Psest_1887 0.26 +0.3
1,996,405 - Psest_1887 0.26 +0.5
1,996,405 - Psest_1887 0.26 +1.5
1,996,405 - Psest_1887 0.26 +2.0
1,996,405 - Psest_1887 0.26 +3.8
1,996,897 - Psest_1887 0.83 +1.8
1,997,564 - Psest_1888 0.81 +1.1
1,997,642 - +0.8
1,997,642 - -0.1
1,997,711 + +1.3
1,997,712 - -0.8
1,997,712 - +1.3
1,997,712 - -1.0
1,997,718 + +1.8
1,997,718 + +1.0
1,997,719 - +2.8
1,997,719 - +2.8
1,997,803 + +1.3
1,997,803 + +1.3
1,997,932 - Psest_1889 0.17 -0.1
1,997,981 + Psest_1889 0.21 +0.9

Or see this region's nucleotide sequence