Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1754

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1753 and Psest_1754 are separated by 135 nucleotidesPsest_1754 and Psest_1755 overlap by 4 nucleotidesPsest_1755 and Psest_1756 are separated by 92 nucleotides Psest_1753: Psest_1753 - Flagellar hook-length control protein FliK., at 1,855,889 to 1,857,418 _1753 Psest_1754: Psest_1754 - heme ABC exporter, ATP-binding protein CcmA, at 1,857,554 to 1,858,189 _1754 Psest_1755: Psest_1755 - heme exporter protein CcmB, at 1,858,186 to 1,858,857 _1755 Psest_1756: Psest_1756 - heme exporter protein CcmC, at 1,858,950 to 1,859,705 _1756 Position (kb) 1857 1858 1859Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1856.585 kb on + strand, within Psest_1753at 1856.585 kb on + strand, within Psest_1753at 1856.639 kb on + strand, within Psest_1753at 1856.640 kb on - strand, within Psest_1753at 1857.159 kb on + strand, within Psest_1753at 1857.159 kb on + strand, within Psest_1753at 1857.159 kb on + strand, within Psest_1753at 1857.160 kb on - strand, within Psest_1753at 1857.436 kb on + strandat 1857.437 kb on - strandat 1857.437 kb on - strandat 1857.481 kb on + strandat 1857.481 kb on + strandat 1857.481 kb on + strandat 1857.481 kb on + strandat 1857.481 kb on + strandat 1857.482 kb on - strandat 1857.482 kb on - strandat 1857.482 kb on - strandat 1857.482 kb on - strandat 1857.482 kb on - strandat 1857.483 kb on + strandat 1857.514 kb on + strandat 1858.896 kb on + strandat 1858.896 kb on + strandat 1858.896 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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1,856,585 + Psest_1753 0.45 -0.4
1,856,585 + Psest_1753 0.45 +2.8
1,856,639 + Psest_1753 0.49 +0.6
1,856,640 - Psest_1753 0.49 -0.3
1,857,159 + Psest_1753 0.83 +2.9
1,857,159 + Psest_1753 0.83 -0.9
1,857,159 + Psest_1753 0.83 -0.2
1,857,160 - Psest_1753 0.83 +0.7
1,857,436 + +1.9
1,857,437 - +2.6
1,857,437 - +1.4
1,857,481 + -0.3
1,857,481 + -1.9
1,857,481 + -0.5
1,857,481 + +1.2
1,857,481 + -0.9
1,857,482 - +1.9
1,857,482 - +2.6
1,857,482 - +1.0
1,857,482 - +4.4
1,857,482 - +2.3
1,857,483 + -2.2
1,857,514 + +0.1
1,858,896 + +0.0
1,858,896 + +1.6
1,858,896 + -0.8

Or see this region's nucleotide sequence