Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1665 and HP15_1666 are separated by 218 nucleotides HP15_1666 and HP15_1667 are separated by 112 nucleotides HP15_1667 and HP15_1668 are separated by 108 nucleotides
HP15_1665: HP15_1665 - transcriptional regulator, LysR family, at 1,756,712 to 1,757,665
_1665
HP15_1666: HP15_1666 - conserved hypothetical protein, at 1,757,884 to 1,758,615
_1666
HP15_1667: HP15_1667 - conserved hypothetical protein, secreted, at 1,758,728 to 1,758,871
_1667
HP15_1668: HP15_1668 - phenazine biosynthesis protein PhzF family, at 1,758,980 to 1,759,876
_1668
Position (kb)
1757
1758
1759 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1756.901 kb on - strand, within HP15_1665 at 1756.941 kb on - strand, within HP15_1665 at 1756.967 kb on - strand, within HP15_1665 at 1757.083 kb on + strand, within HP15_1665 at 1757.093 kb on - strand, within HP15_1665 at 1757.123 kb on + strand, within HP15_1665 at 1757.131 kb on - strand, within HP15_1665 at 1757.143 kb on - strand, within HP15_1665 at 1757.198 kb on - strand, within HP15_1665 at 1757.257 kb on + strand, within HP15_1665 at 1757.293 kb on + strand, within HP15_1665 at 1757.298 kb on + strand, within HP15_1665 at 1757.323 kb on - strand, within HP15_1665 at 1757.340 kb on - strand, within HP15_1665 at 1757.405 kb on - strand, within HP15_1665 at 1757.443 kb on - strand, within HP15_1665 at 1757.483 kb on - strand, within HP15_1665 at 1757.489 kb on - strand, within HP15_1665 at 1757.517 kb on + strand, within HP15_1665 at 1757.525 kb on - strand, within HP15_1665 at 1757.585 kb on + strand at 1757.988 kb on + strand, within HP15_1666 at 1757.996 kb on - strand, within HP15_1666 at 1758.163 kb on + strand, within HP15_1666 at 1758.359 kb on - strand, within HP15_1666 at 1758.369 kb on - strand, within HP15_1666 at 1758.437 kb on - strand, within HP15_1666 at 1758.486 kb on - strand, within HP15_1666 at 1758.508 kb on + strand, within HP15_1666 at 1758.550 kb on - strand at 1758.550 kb on - strand at 1758.573 kb on - strand at 1758.579 kb on + strand at 1758.579 kb on + strand at 1758.595 kb on + strand at 1758.727 kb on - strand at 1758.801 kb on + strand, within HP15_1667 at 1758.801 kb on + strand, within HP15_1667 at 1758.801 kb on + strand, within HP15_1667 at 1758.801 kb on + strand, within HP15_1667 at 1758.809 kb on - strand, within HP15_1667 at 1758.809 kb on - strand, within HP15_1667 at 1758.809 kb on - strand, within HP15_1667 at 1758.811 kb on + strand, within HP15_1667 at 1758.929 kb on - strand at 1758.975 kb on + strand at 1758.996 kb on - strand at 1759.001 kb on - strand at 1759.081 kb on - strand, within HP15_1668 at 1759.112 kb on + strand, within HP15_1668 at 1759.120 kb on - strand, within HP15_1668 at 1759.120 kb on - strand, within HP15_1668 at 1759.135 kb on + strand, within HP15_1668 at 1759.143 kb on - strand, within HP15_1668 at 1759.188 kb on - strand, within HP15_1668 at 1759.190 kb on - strand, within HP15_1668 at 1759.230 kb on - strand, within HP15_1668 at 1759.231 kb on - strand, within HP15_1668 at 1759.250 kb on + strand, within HP15_1668 at 1759.300 kb on - strand, within HP15_1668 at 1759.308 kb on + strand, within HP15_1668 at 1759.357 kb on + strand, within HP15_1668 at 1759.424 kb on - strand, within HP15_1668 at 1759.465 kb on + strand, within HP15_1668 at 1759.473 kb on - strand, within HP15_1668 at 1759.475 kb on + strand, within HP15_1668 at 1759.502 kb on + strand at 1759.584 kb on - strand, within HP15_1668
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,756,901 - HP15_1665 0.20 -0.1 1,756,941 - HP15_1665 0.24 -0.9 1,756,967 - HP15_1665 0.27 -0.3 1,757,083 + HP15_1665 0.39 +0.3 1,757,093 - HP15_1665 0.40 +1.9 1,757,123 + HP15_1665 0.43 -1.1 1,757,131 - HP15_1665 0.44 +1.6 1,757,143 - HP15_1665 0.45 +0.8 1,757,198 - HP15_1665 0.51 +1.6 1,757,257 + HP15_1665 0.57 -0.8 1,757,293 + HP15_1665 0.61 +2.1 1,757,298 + HP15_1665 0.61 +0.1 1,757,323 - HP15_1665 0.64 +0.7 1,757,340 - HP15_1665 0.66 -1.3 1,757,405 - HP15_1665 0.73 -0.3 1,757,443 - HP15_1665 0.77 -0.6 1,757,483 - HP15_1665 0.81 +1.6 1,757,489 - HP15_1665 0.81 -0.3 1,757,517 + HP15_1665 0.84 -0.3 1,757,525 - HP15_1665 0.85 +1.7 1,757,585 + +1.9 1,757,988 + HP15_1666 0.14 -0.4 1,757,996 - HP15_1666 0.15 -0.6 1,758,163 + HP15_1666 0.38 -0.1 1,758,359 - HP15_1666 0.65 +0.3 1,758,369 - HP15_1666 0.66 -0.7 1,758,437 - HP15_1666 0.76 +1.5 1,758,486 - HP15_1666 0.82 +0.0 1,758,508 + HP15_1666 0.85 -0.7 1,758,550 - +1.9 1,758,550 - -0.0 1,758,573 - +2.0 1,758,579 + +1.6 1,758,579 + -0.4 1,758,595 + +1.5 1,758,727 - -0.7 1,758,801 + HP15_1667 0.51 +1.7 1,758,801 + HP15_1667 0.51 +0.0 1,758,801 + HP15_1667 0.51 -0.2 1,758,801 + HP15_1667 0.51 +2.0 1,758,809 - HP15_1667 0.56 -0.2 1,758,809 - HP15_1667 0.56 -0.6 1,758,809 - HP15_1667 0.56 -0.5 1,758,811 + HP15_1667 0.58 +1.5 1,758,929 - -0.3 1,758,975 + -1.4 1,758,996 - -0.4 1,759,001 - +1.9 1,759,081 - HP15_1668 0.11 +1.9 1,759,112 + HP15_1668 0.15 -0.1 1,759,120 - HP15_1668 0.16 +0.6 1,759,120 - HP15_1668 0.16 -0.5 1,759,135 + HP15_1668 0.17 +1.7 1,759,143 - HP15_1668 0.18 -0.8 1,759,188 - HP15_1668 0.23 -0.2 1,759,190 - HP15_1668 0.23 -0.2 1,759,230 - HP15_1668 0.28 +1.8 1,759,231 - HP15_1668 0.28 +1.7 1,759,250 + HP15_1668 0.30 -1.3 1,759,300 - HP15_1668 0.36 -1.1 1,759,308 + HP15_1668 0.37 +1.3 1,759,357 + HP15_1668 0.42 -2.0 1,759,424 - HP15_1668 0.49 +1.1 1,759,465 + HP15_1668 0.54 -0.4 1,759,473 - HP15_1668 0.55 -0.6 1,759,475 + HP15_1668 0.55 +0.2 1,759,502 + -0.4 1,759,584 - HP15_1668 0.67 +0.0
Or see this region's nucleotide sequence