Strain Fitness in Marinobacter adhaerens HP15 around HP15_1666

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1665 and HP15_1666 are separated by 218 nucleotidesHP15_1666 and HP15_1667 are separated by 112 nucleotidesHP15_1667 and HP15_1668 are separated by 108 nucleotides HP15_1665: HP15_1665 - transcriptional regulator, LysR family, at 1,756,712 to 1,757,665 _1665 HP15_1666: HP15_1666 - conserved hypothetical protein, at 1,757,884 to 1,758,615 _1666 HP15_1667: HP15_1667 - conserved hypothetical protein, secreted, at 1,758,728 to 1,758,871 _1667 HP15_1668: HP15_1668 - phenazine biosynthesis protein PhzF family, at 1,758,980 to 1,759,876 _1668 Position (kb) 1757 1758 1759Strain fitness (log2 ratio) -2 -1 0 1 2at 1756.901 kb on - strand, within HP15_1665at 1756.941 kb on - strand, within HP15_1665at 1756.967 kb on - strand, within HP15_1665at 1757.083 kb on + strand, within HP15_1665at 1757.093 kb on - strand, within HP15_1665at 1757.123 kb on + strand, within HP15_1665at 1757.131 kb on - strand, within HP15_1665at 1757.143 kb on - strand, within HP15_1665at 1757.198 kb on - strand, within HP15_1665at 1757.257 kb on + strand, within HP15_1665at 1757.293 kb on + strand, within HP15_1665at 1757.298 kb on + strand, within HP15_1665at 1757.323 kb on - strand, within HP15_1665at 1757.340 kb on - strand, within HP15_1665at 1757.405 kb on - strand, within HP15_1665at 1757.443 kb on - strand, within HP15_1665at 1757.483 kb on - strand, within HP15_1665at 1757.489 kb on - strand, within HP15_1665at 1757.517 kb on + strand, within HP15_1665at 1757.525 kb on - strand, within HP15_1665at 1757.585 kb on + strandat 1757.988 kb on + strand, within HP15_1666at 1757.996 kb on - strand, within HP15_1666at 1758.163 kb on + strand, within HP15_1666at 1758.359 kb on - strand, within HP15_1666at 1758.369 kb on - strand, within HP15_1666at 1758.437 kb on - strand, within HP15_1666at 1758.486 kb on - strand, within HP15_1666at 1758.508 kb on + strand, within HP15_1666at 1758.550 kb on - strandat 1758.550 kb on - strandat 1758.573 kb on - strandat 1758.579 kb on + strandat 1758.579 kb on + strandat 1758.595 kb on + strandat 1758.727 kb on - strandat 1758.801 kb on + strand, within HP15_1667at 1758.801 kb on + strand, within HP15_1667at 1758.801 kb on + strand, within HP15_1667at 1758.801 kb on + strand, within HP15_1667at 1758.809 kb on - strand, within HP15_1667at 1758.809 kb on - strand, within HP15_1667at 1758.809 kb on - strand, within HP15_1667at 1758.811 kb on + strand, within HP15_1667at 1758.929 kb on - strandat 1758.975 kb on + strandat 1758.996 kb on - strandat 1759.001 kb on - strandat 1759.081 kb on - strand, within HP15_1668at 1759.112 kb on + strand, within HP15_1668at 1759.120 kb on - strand, within HP15_1668at 1759.120 kb on - strand, within HP15_1668at 1759.135 kb on + strand, within HP15_1668at 1759.143 kb on - strand, within HP15_1668at 1759.188 kb on - strand, within HP15_1668at 1759.190 kb on - strand, within HP15_1668at 1759.230 kb on - strand, within HP15_1668at 1759.231 kb on - strand, within HP15_1668at 1759.250 kb on + strand, within HP15_1668at 1759.300 kb on - strand, within HP15_1668at 1759.308 kb on + strand, within HP15_1668at 1759.357 kb on + strand, within HP15_1668at 1759.424 kb on - strand, within HP15_1668at 1759.465 kb on + strand, within HP15_1668at 1759.473 kb on - strand, within HP15_1668at 1759.475 kb on + strand, within HP15_1668at 1759.502 kb on + strandat 1759.584 kb on - strand, within HP15_1668

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,756,901 - HP15_1665 0.20 -0.1
1,756,941 - HP15_1665 0.24 -0.9
1,756,967 - HP15_1665 0.27 -0.3
1,757,083 + HP15_1665 0.39 +0.3
1,757,093 - HP15_1665 0.40 +1.9
1,757,123 + HP15_1665 0.43 -1.1
1,757,131 - HP15_1665 0.44 +1.6
1,757,143 - HP15_1665 0.45 +0.8
1,757,198 - HP15_1665 0.51 +1.6
1,757,257 + HP15_1665 0.57 -0.8
1,757,293 + HP15_1665 0.61 +2.1
1,757,298 + HP15_1665 0.61 +0.1
1,757,323 - HP15_1665 0.64 +0.7
1,757,340 - HP15_1665 0.66 -1.3
1,757,405 - HP15_1665 0.73 -0.3
1,757,443 - HP15_1665 0.77 -0.6
1,757,483 - HP15_1665 0.81 +1.6
1,757,489 - HP15_1665 0.81 -0.3
1,757,517 + HP15_1665 0.84 -0.3
1,757,525 - HP15_1665 0.85 +1.7
1,757,585 + +1.9
1,757,988 + HP15_1666 0.14 -0.4
1,757,996 - HP15_1666 0.15 -0.6
1,758,163 + HP15_1666 0.38 -0.1
1,758,359 - HP15_1666 0.65 +0.3
1,758,369 - HP15_1666 0.66 -0.7
1,758,437 - HP15_1666 0.76 +1.5
1,758,486 - HP15_1666 0.82 +0.0
1,758,508 + HP15_1666 0.85 -0.7
1,758,550 - +1.9
1,758,550 - -0.0
1,758,573 - +2.0
1,758,579 + +1.6
1,758,579 + -0.4
1,758,595 + +1.5
1,758,727 - -0.7
1,758,801 + HP15_1667 0.51 +1.7
1,758,801 + HP15_1667 0.51 +0.0
1,758,801 + HP15_1667 0.51 -0.2
1,758,801 + HP15_1667 0.51 +2.0
1,758,809 - HP15_1667 0.56 -0.2
1,758,809 - HP15_1667 0.56 -0.6
1,758,809 - HP15_1667 0.56 -0.5
1,758,811 + HP15_1667 0.58 +1.5
1,758,929 - -0.3
1,758,975 + -1.4
1,758,996 - -0.4
1,759,001 - +1.9
1,759,081 - HP15_1668 0.11 +1.9
1,759,112 + HP15_1668 0.15 -0.1
1,759,120 - HP15_1668 0.16 +0.6
1,759,120 - HP15_1668 0.16 -0.5
1,759,135 + HP15_1668 0.17 +1.7
1,759,143 - HP15_1668 0.18 -0.8
1,759,188 - HP15_1668 0.23 -0.2
1,759,190 - HP15_1668 0.23 -0.2
1,759,230 - HP15_1668 0.28 +1.8
1,759,231 - HP15_1668 0.28 +1.7
1,759,250 + HP15_1668 0.30 -1.3
1,759,300 - HP15_1668 0.36 -1.1
1,759,308 + HP15_1668 0.37 +1.3
1,759,357 + HP15_1668 0.42 -2.0
1,759,424 - HP15_1668 0.49 +1.1
1,759,465 + HP15_1668 0.54 -0.4
1,759,473 - HP15_1668 0.55 -0.6
1,759,475 + HP15_1668 0.55 +0.2
1,759,502 + -0.4
1,759,584 - HP15_1668 0.67 +0.0

Or see this region's nucleotide sequence