Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1736

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1735 and Psest_1736 are separated by 47 nucleotidesPsest_1736 and Psest_1737 are separated by 219 nucleotides Psest_1735: Psest_1735 - flagellar biosynthetic protein FlhB, at 1,839,032 to 1,840,168 _1735 Psest_1736: Psest_1736 - Cu/Zn superoxide dismutase, at 1,840,216 to 1,840,737 _1736 Psest_1737: Psest_1737 - flagellar biosynthesis protein FlhA, at 1,840,957 to 1,843,077 _1737 Position (kb) 1840 1841Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1839.725 kb on + strand, within Psest_1735at 1839.725 kb on + strand, within Psest_1735at 1839.725 kb on + strand, within Psest_1735at 1839.726 kb on - strand, within Psest_1735at 1839.726 kb on - strand, within Psest_1735at 1839.726 kb on - strand, within Psest_1735at 1839.726 kb on - strand, within Psest_1735at 1839.869 kb on + strand, within Psest_1735at 1840.001 kb on + strand, within Psest_1735at 1840.001 kb on + strand, within Psest_1735at 1840.001 kb on + strand, within Psest_1735at 1840.002 kb on - strand, within Psest_1735at 1840.002 kb on - strand, within Psest_1735at 1840.002 kb on - strand, within Psest_1735at 1840.002 kb on - strand, within Psest_1735at 1840.004 kb on + strand, within Psest_1735at 1840.004 kb on + strand, within Psest_1735at 1840.043 kb on + strand, within Psest_1735at 1840.070 kb on + strandat 1840.070 kb on + strandat 1840.071 kb on - strandat 1840.071 kb on - strandat 1840.071 kb on - strandat 1840.071 kb on - strandat 1840.071 kb on - strandat 1840.071 kb on - strandat 1840.077 kb on - strandat 1840.077 kb on - strandat 1840.077 kb on - strandat 1840.389 kb on - strand, within Psest_1736at 1840.411 kb on - strand, within Psest_1736at 1840.411 kb on - strand, within Psest_1736at 1840.570 kb on + strand, within Psest_1736at 1840.570 kb on + strand, within Psest_1736at 1840.570 kb on + strand, within Psest_1736at 1840.570 kb on + strand, within Psest_1736at 1840.570 kb on + strand, within Psest_1736at 1840.571 kb on - strand, within Psest_1736at 1840.571 kb on - strand, within Psest_1736at 1840.652 kb on - strand, within Psest_1736at 1840.782 kb on + strandat 1840.783 kb on - strandat 1840.898 kb on + strandat 1840.898 kb on + strandat 1840.898 kb on + strandat 1840.898 kb on + strandat 1840.898 kb on + strandat 1840.898 kb on + strandat 1840.899 kb on - strandat 1840.899 kb on - strandat 1840.899 kb on - strandat 1840.899 kb on - strandat 1840.899 kb on - strandat 1840.899 kb on - strandat 1840.954 kb on - strandat 1840.980 kb on + strandat 1841.143 kb on + strandat 1841.143 kb on + strandat 1841.144 kb on - strandat 1841.320 kb on + strand, within Psest_1737at 1841.320 kb on + strand, within Psest_1737at 1841.320 kb on + strand, within Psest_1737at 1841.320 kb on + strand, within Psest_1737at 1841.321 kb on - strand, within Psest_1737at 1841.321 kb on - strand, within Psest_1737

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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1,839,725 + Psest_1735 0.61 +0.4
1,839,725 + Psest_1735 0.61 +1.0
1,839,725 + Psest_1735 0.61 +0.9
1,839,726 - Psest_1735 0.61 +1.7
1,839,726 - Psest_1735 0.61 +0.3
1,839,726 - Psest_1735 0.61 -2.1
1,839,726 - Psest_1735 0.61 -2.5
1,839,869 + Psest_1735 0.74 -1.4
1,840,001 + Psest_1735 0.85 -1.3
1,840,001 + Psest_1735 0.85 +1.0
1,840,001 + Psest_1735 0.85 +0.3
1,840,002 - Psest_1735 0.85 -1.5
1,840,002 - Psest_1735 0.85 -2.7
1,840,002 - Psest_1735 0.85 +0.3
1,840,002 - Psest_1735 0.85 +0.5
1,840,004 + Psest_1735 0.85 -0.5
1,840,004 + Psest_1735 0.85 -1.4
1,840,043 + Psest_1735 0.89 -2.8
1,840,070 + -0.0
1,840,070 + +1.3
1,840,071 - -0.8
1,840,071 - -2.9
1,840,071 - +2.2
1,840,071 - -2.8
1,840,071 - +1.9
1,840,071 - +1.2
1,840,077 - -0.0
1,840,077 - -3.3
1,840,077 - +0.5
1,840,389 - Psest_1736 0.33 +0.0
1,840,411 - Psest_1736 0.37 -0.7
1,840,411 - Psest_1736 0.37 -1.1
1,840,570 + Psest_1736 0.68 +0.1
1,840,570 + Psest_1736 0.68 -1.1
1,840,570 + Psest_1736 0.68 -1.3
1,840,570 + Psest_1736 0.68 -0.7
1,840,570 + Psest_1736 0.68 +0.2
1,840,571 - Psest_1736 0.68 +0.5
1,840,571 - Psest_1736 0.68 -2.8
1,840,652 - Psest_1736 0.84 +0.6
1,840,782 + -0.5
1,840,783 - +0.4
1,840,898 + +0.5
1,840,898 + +0.3
1,840,898 + +0.4
1,840,898 + -0.0
1,840,898 + -0.9
1,840,898 + -1.0
1,840,899 - -0.2
1,840,899 - +0.7
1,840,899 - -0.3
1,840,899 - -2.0
1,840,899 - -0.3
1,840,899 - -0.4
1,840,954 - -0.7
1,840,980 + -4.3
1,841,143 + -2.7
1,841,143 + -1.7
1,841,144 - -1.5
1,841,320 + Psest_1737 0.17 -2.9
1,841,320 + Psest_1737 0.17 -0.1
1,841,320 + Psest_1737 0.17 -1.9
1,841,320 + Psest_1737 0.17 -3.8
1,841,321 - Psest_1737 0.17 +0.8
1,841,321 - Psest_1737 0.17 -1.0

Or see this region's nucleotide sequence