Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1709

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1707 and Psest_1708 are separated by 8 nucleotidesPsest_1708 and Psest_1709 overlap by 4 nucleotidesPsest_1709 and Psest_1710 are separated by 103 nucleotides Psest_1707: Psest_1707 - ABC-type amino acid transport/signal transduction systems, periplasmic component/domain, at 1,813,386 to 1,814,207 _1707 Psest_1708: Psest_1708 - hypothetical protein, at 1,814,216 to 1,814,572 _1708 Psest_1709: Psest_1709 - Outer membrane protein and related peptidoglycan-associated (lipo)proteins, at 1,814,569 to 1,815,366 _1709 Psest_1710: Psest_1710 - Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs, at 1,815,470 to 1,816,900 _1710 Position (kb) 1814 1815 1816Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1813.608 kb on + strand, within Psest_1707at 1813.608 kb on + strand, within Psest_1707at 1813.608 kb on + strand, within Psest_1707at 1813.609 kb on - strand, within Psest_1707at 1813.609 kb on - strand, within Psest_1707at 1813.642 kb on + strand, within Psest_1707at 1813.664 kb on - strand, within Psest_1707at 1813.735 kb on + strand, within Psest_1707at 1813.735 kb on + strand, within Psest_1707at 1813.736 kb on - strand, within Psest_1707at 1813.776 kb on + strand, within Psest_1707at 1813.776 kb on + strand, within Psest_1707at 1813.935 kb on + strand, within Psest_1707at 1813.936 kb on - strand, within Psest_1707at 1813.936 kb on - strand, within Psest_1707at 1814.150 kb on + strandat 1814.205 kb on + strandat 1814.206 kb on - strandat 1814.206 kb on - strandat 1814.241 kb on + strandat 1814.341 kb on - strand, within Psest_1708at 1814.341 kb on - strand, within Psest_1708at 1814.544 kb on + strandat 1814.545 kb on - strandat 1814.583 kb on - strandat 1814.612 kb on + strandat 1814.612 kb on + strandat 1814.613 kb on - strandat 1814.717 kb on + strand, within Psest_1709at 1814.718 kb on - strand, within Psest_1709at 1814.765 kb on - strand, within Psest_1709at 1814.800 kb on + strand, within Psest_1709at 1815.119 kb on + strand, within Psest_1709at 1815.373 kb on + strandat 1815.373 kb on + strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.374 kb on - strandat 1815.488 kb on + strandat 1815.617 kb on + strand, within Psest_1710at 1815.617 kb on + strand, within Psest_1710at 1815.617 kb on + strand, within Psest_1710at 1815.617 kb on + strand, within Psest_1710at 1815.617 kb on + strand, within Psest_1710at 1815.618 kb on - strand, within Psest_1710at 1815.618 kb on - strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.671 kb on + strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.672 kb on - strand, within Psest_1710at 1815.694 kb on + strand, within Psest_1710at 1815.694 kb on + strand, within Psest_1710at 1815.695 kb on - strand, within Psest_1710at 1815.768 kb on + strand, within Psest_1710at 1815.830 kb on + strand, within Psest_1710at 1815.902 kb on + strand, within Psest_1710at 1815.902 kb on + strand, within Psest_1710at 1815.902 kb on + strand, within Psest_1710at 1815.903 kb on - strand, within Psest_1710at 1815.903 kb on - strand, within Psest_1710at 1815.903 kb on - strand, within Psest_1710at 1815.903 kb on - strand, within Psest_1710at 1815.903 kb on - strand, within Psest_1710at 1815.920 kb on + strand, within Psest_1710at 1815.920 kb on + strand, within Psest_1710at 1816.039 kb on - strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.082 kb on + strand, within Psest_1710at 1816.083 kb on - strand, within Psest_1710at 1816.083 kb on - strand, within Psest_1710at 1816.083 kb on - strand, within Psest_1710at 1816.086 kb on - strand, within Psest_1710at 1816.325 kb on + strand, within Psest_1710at 1816.325 kb on + strand, within Psest_1710at 1816.325 kb on + strand, within Psest_1710at 1816.355 kb on + strand, within Psest_1710at 1816.356 kb on - strand, within Psest_1710

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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1,813,608 + Psest_1707 0.27 +1.9
1,813,608 + Psest_1707 0.27 -0.8
1,813,608 + Psest_1707 0.27 -0.3
1,813,609 - Psest_1707 0.27 -0.4
1,813,609 - Psest_1707 0.27 +1.7
1,813,642 + Psest_1707 0.31 +1.5
1,813,664 - Psest_1707 0.34 +0.2
1,813,735 + Psest_1707 0.42 +1.6
1,813,735 + Psest_1707 0.42 -1.7
1,813,736 - Psest_1707 0.43 -0.3
1,813,776 + Psest_1707 0.47 -3.5
1,813,776 + Psest_1707 0.47 +1.9
1,813,935 + Psest_1707 0.67 +1.7
1,813,936 - Psest_1707 0.67 +0.2
1,813,936 - Psest_1707 0.67 +0.9
1,814,150 + +0.9
1,814,205 + +1.4
1,814,206 - +0.1
1,814,206 - -3.7
1,814,241 + -0.2
1,814,341 - Psest_1708 0.35 +1.8
1,814,341 - Psest_1708 0.35 +0.7
1,814,544 + -0.7
1,814,545 - +0.1
1,814,583 - -1.5
1,814,612 + -0.8
1,814,612 + +2.0
1,814,613 - +0.5
1,814,717 + Psest_1709 0.19 -0.6
1,814,718 - Psest_1709 0.19 -1.8
1,814,765 - Psest_1709 0.25 -1.8
1,814,800 + Psest_1709 0.29 +0.4
1,815,119 + Psest_1709 0.69 -1.2
1,815,373 + -0.7
1,815,373 + +1.2
1,815,374 - -0.5
1,815,374 - -0.0
1,815,374 - +1.8
1,815,374 - +0.8
1,815,374 - -1.2
1,815,374 - +0.8
1,815,374 - -1.4
1,815,488 + -2.7
1,815,617 + Psest_1710 0.10 +0.3
1,815,617 + Psest_1710 0.10 -1.6
1,815,617 + Psest_1710 0.10 +1.3
1,815,617 + Psest_1710 0.10 +0.4
1,815,617 + Psest_1710 0.10 -2.2
1,815,618 - Psest_1710 0.10 -0.1
1,815,618 - Psest_1710 0.10 +0.1
1,815,671 + Psest_1710 0.14 +0.4
1,815,671 + Psest_1710 0.14 -1.9
1,815,671 + Psest_1710 0.14 -0.3
1,815,671 + Psest_1710 0.14 -0.6
1,815,671 + Psest_1710 0.14 -0.4
1,815,671 + Psest_1710 0.14 -3.1
1,815,671 + Psest_1710 0.14 -0.6
1,815,671 + Psest_1710 0.14 -1.0
1,815,671 + Psest_1710 0.14 -1.1
1,815,671 + Psest_1710 0.14 +1.1
1,815,671 + Psest_1710 0.14 -2.1
1,815,671 + Psest_1710 0.14 -1.7
1,815,671 + Psest_1710 0.14 +2.1
1,815,671 + Psest_1710 0.14 -3.8
1,815,671 + Psest_1710 0.14 +1.3
1,815,672 - Psest_1710 0.14 -1.1
1,815,672 - Psest_1710 0.14 -0.2
1,815,672 - Psest_1710 0.14 +0.3
1,815,672 - Psest_1710 0.14 +1.3
1,815,672 - Psest_1710 0.14 -0.5
1,815,672 - Psest_1710 0.14 -1.8
1,815,672 - Psest_1710 0.14 -0.3
1,815,672 - Psest_1710 0.14 -2.3
1,815,672 - Psest_1710 0.14 -0.2
1,815,672 - Psest_1710 0.14 -1.6
1,815,694 + Psest_1710 0.16 -2.1
1,815,694 + Psest_1710 0.16 -0.9
1,815,695 - Psest_1710 0.16 -0.6
1,815,768 + Psest_1710 0.21 -1.8
1,815,830 + Psest_1710 0.25 +0.9
1,815,902 + Psest_1710 0.30 +0.2
1,815,902 + Psest_1710 0.30 -0.5
1,815,902 + Psest_1710 0.30 +0.3
1,815,903 - Psest_1710 0.30 -0.6
1,815,903 - Psest_1710 0.30 +0.5
1,815,903 - Psest_1710 0.30 +1.3
1,815,903 - Psest_1710 0.30 +0.2
1,815,903 - Psest_1710 0.30 +1.6
1,815,920 + Psest_1710 0.31 +0.9
1,815,920 + Psest_1710 0.31 +0.2
1,816,039 - Psest_1710 0.40 +2.3
1,816,082 + Psest_1710 0.43 -0.9
1,816,082 + Psest_1710 0.43 +0.2
1,816,082 + Psest_1710 0.43 +0.0
1,816,082 + Psest_1710 0.43 +0.4
1,816,082 + Psest_1710 0.43 -1.7
1,816,082 + Psest_1710 0.43 +1.5
1,816,082 + Psest_1710 0.43 -0.3
1,816,083 - Psest_1710 0.43 +1.2
1,816,083 - Psest_1710 0.43 -0.4
1,816,083 - Psest_1710 0.43 -1.6
1,816,086 - Psest_1710 0.43 -1.7
1,816,325 + Psest_1710 0.60 -1.7
1,816,325 + Psest_1710 0.60 +0.0
1,816,325 + Psest_1710 0.60 +0.3
1,816,355 + Psest_1710 0.62 +2.2
1,816,356 - Psest_1710 0.62 +0.6

Or see this region's nucleotide sequence