Strain Fitness in Marinobacter adhaerens HP15 around HP15_1598

Experiment: a-Ketoglutaric (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHP15_1597 and HP15_1598 overlap by 11 nucleotidesHP15_1598 and HP15_1599 are separated by 26 nucleotides HP15_1597: HP15_1597 - carbohydrate kinase, FGGY, at 1,692,486 to 1,694,045 _1597 HP15_1598: HP15_1598 - FAD dependent oxidoreductase, at 1,694,035 to 1,695,633 _1598 HP15_1599: HP15_1599 - alkylglycerone-phosphate synthase, at 1,695,660 to 1,697,264 _1599 Position (kb) 1694 1695 1696Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1693.135 kb on + strand, within HP15_1597at 1693.143 kb on - strand, within HP15_1597at 1693.204 kb on + strand, within HP15_1597at 1693.344 kb on + strand, within HP15_1597at 1693.382 kb on + strand, within HP15_1597at 1693.609 kb on - strand, within HP15_1597at 1693.687 kb on - strand, within HP15_1597at 1693.805 kb on + strand, within HP15_1597at 1693.827 kb on - strand, within HP15_1597at 1693.867 kb on + strand, within HP15_1597at 1693.880 kb on + strand, within HP15_1597at 1693.911 kb on + strandat 1694.053 kb on + strandat 1694.201 kb on + strand, within HP15_1598at 1694.205 kb on - strand, within HP15_1598at 1694.223 kb on + strand, within HP15_1598at 1694.282 kb on - strand, within HP15_1598at 1694.284 kb on + strand, within HP15_1598at 1694.287 kb on - strand, within HP15_1598at 1694.316 kb on + strand, within HP15_1598at 1694.413 kb on + strand, within HP15_1598at 1694.414 kb on - strand, within HP15_1598at 1694.414 kb on - strand, within HP15_1598at 1694.519 kb on + strand, within HP15_1598at 1694.519 kb on + strand, within HP15_1598at 1694.548 kb on - strand, within HP15_1598at 1694.619 kb on + strand, within HP15_1598at 1694.625 kb on + strand, within HP15_1598at 1694.625 kb on + strand, within HP15_1598at 1694.625 kb on + strand, within HP15_1598at 1694.633 kb on - strand, within HP15_1598at 1694.806 kb on + strand, within HP15_1598at 1694.814 kb on - strand, within HP15_1598at 1694.865 kb on + strand, within HP15_1598at 1694.870 kb on + strand, within HP15_1598at 1694.873 kb on - strand, within HP15_1598at 1694.873 kb on - strand, within HP15_1598at 1694.901 kb on + strand, within HP15_1598at 1694.903 kb on + strand, within HP15_1598at 1694.904 kb on - strand, within HP15_1598at 1694.911 kb on - strand, within HP15_1598at 1695.028 kb on - strand, within HP15_1598at 1695.272 kb on + strand, within HP15_1598at 1695.284 kb on + strand, within HP15_1598at 1695.292 kb on - strand, within HP15_1598at 1695.356 kb on - strand, within HP15_1598at 1695.616 kb on - strandat 1695.698 kb on + strandat 1695.706 kb on - strandat 1695.706 kb on - strandat 1695.714 kb on - strandat 1695.827 kb on + strand, within HP15_1599at 1695.827 kb on + strand, within HP15_1599at 1695.835 kb on - strand, within HP15_1599at 1695.835 kb on - strand, within HP15_1599at 1696.008 kb on - strand, within HP15_1599at 1696.032 kb on + strand, within HP15_1599at 1696.061 kb on + strand, within HP15_1599at 1696.066 kb on + strand, within HP15_1599at 1696.180 kb on + strand, within HP15_1599at 1696.188 kb on - strand, within HP15_1599at 1696.251 kb on + strand, within HP15_1599at 1696.363 kb on - strand, within HP15_1599at 1696.399 kb on - strand, within HP15_1599at 1696.447 kb on - strand, within HP15_1599at 1696.461 kb on - strand, within HP15_1599at 1696.504 kb on - strand, within HP15_1599at 1696.536 kb on + strand, within HP15_1599at 1696.544 kb on - strand, within HP15_1599at 1696.571 kb on + strand, within HP15_1599at 1696.571 kb on + strand, within HP15_1599at 1696.571 kb on + strand, within HP15_1599at 1696.571 kb on + strand, within HP15_1599at 1696.571 kb on + strand, within HP15_1599at 1696.571 kb on + strand, within HP15_1599at 1696.571 kb on + strand, within HP15_1599at 1696.579 kb on - strand, within HP15_1599at 1696.579 kb on - strand, within HP15_1599at 1696.579 kb on - strand, within HP15_1599

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Per-strain Table

Position Strand Gene LocusTag Fraction a-Ketoglutaric (C)
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1,693,135 + HP15_1597 0.42 +1.8
1,693,143 - HP15_1597 0.42 +0.0
1,693,204 + HP15_1597 0.46 +1.5
1,693,344 + HP15_1597 0.55 -1.3
1,693,382 + HP15_1597 0.57 +0.7
1,693,609 - HP15_1597 0.72 -0.8
1,693,687 - HP15_1597 0.77 +1.2
1,693,805 + HP15_1597 0.85 +0.1
1,693,827 - HP15_1597 0.86 -0.4
1,693,867 + HP15_1597 0.89 +0.7
1,693,880 + HP15_1597 0.89 +1.4
1,693,911 + +0.6
1,694,053 + +1.6
1,694,201 + HP15_1598 0.10 -0.3
1,694,205 - HP15_1598 0.11 -1.2
1,694,223 + HP15_1598 0.12 +1.7
1,694,282 - HP15_1598 0.15 +0.6
1,694,284 + HP15_1598 0.16 +1.5
1,694,287 - HP15_1598 0.16 -3.7
1,694,316 + HP15_1598 0.18 -1.6
1,694,413 + HP15_1598 0.24 -0.6
1,694,414 - HP15_1598 0.24 -0.1
1,694,414 - HP15_1598 0.24 -0.3
1,694,519 + HP15_1598 0.30 -0.1
1,694,519 + HP15_1598 0.30 -0.3
1,694,548 - HP15_1598 0.32 +0.9
1,694,619 + HP15_1598 0.37 -0.0
1,694,625 + HP15_1598 0.37 -2.0
1,694,625 + HP15_1598 0.37 -0.3
1,694,625 + HP15_1598 0.37 +1.9
1,694,633 - HP15_1598 0.37 +0.5
1,694,806 + HP15_1598 0.48 -0.9
1,694,814 - HP15_1598 0.49 +1.9
1,694,865 + HP15_1598 0.52 +2.2
1,694,870 + HP15_1598 0.52 -0.2
1,694,873 - HP15_1598 0.52 +0.1
1,694,873 - HP15_1598 0.52 -0.4
1,694,901 + HP15_1598 0.54 -0.2
1,694,903 + HP15_1598 0.54 -0.5
1,694,904 - HP15_1598 0.54 -0.9
1,694,911 - HP15_1598 0.55 -0.7
1,695,028 - HP15_1598 0.62 +1.1
1,695,272 + HP15_1598 0.77 +1.6
1,695,284 + HP15_1598 0.78 -0.8
1,695,292 - HP15_1598 0.79 -0.1
1,695,356 - HP15_1598 0.83 -0.5
1,695,616 - +1.7
1,695,698 + -0.7
1,695,706 - +1.4
1,695,706 - +0.5
1,695,714 - +0.2
1,695,827 + HP15_1599 0.10 -0.5
1,695,827 + HP15_1599 0.10 -0.6
1,695,835 - HP15_1599 0.11 +1.4
1,695,835 - HP15_1599 0.11 +0.0
1,696,008 - HP15_1599 0.22 -0.2
1,696,032 + HP15_1599 0.23 -0.4
1,696,061 + HP15_1599 0.25 +1.7
1,696,066 + HP15_1599 0.25 +1.0
1,696,180 + HP15_1599 0.32 -0.5
1,696,188 - HP15_1599 0.33 -0.6
1,696,251 + HP15_1599 0.37 -0.7
1,696,363 - HP15_1599 0.44 -0.3
1,696,399 - HP15_1599 0.46 +1.7
1,696,447 - HP15_1599 0.49 +1.5
1,696,461 - HP15_1599 0.50 +1.5
1,696,504 - HP15_1599 0.53 +0.9
1,696,536 + HP15_1599 0.55 -0.8
1,696,544 - HP15_1599 0.55 +1.8
1,696,571 + HP15_1599 0.57 -0.5
1,696,571 + HP15_1599 0.57 -0.2
1,696,571 + HP15_1599 0.57 +0.7
1,696,571 + HP15_1599 0.57 -0.3
1,696,571 + HP15_1599 0.57 +1.6
1,696,571 + HP15_1599 0.57 +1.6
1,696,571 + HP15_1599 0.57 +2.1
1,696,579 - HP15_1599 0.57 +1.1
1,696,579 - HP15_1599 0.57 -0.3
1,696,579 - HP15_1599 0.57 +1.2

Or see this region's nucleotide sequence