Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1597 and HP15_1598 overlap by 11 nucleotides HP15_1598 and HP15_1599 are separated by 26 nucleotides
HP15_1597: HP15_1597 - carbohydrate kinase, FGGY, at 1,692,486 to 1,694,045
_1597
HP15_1598: HP15_1598 - FAD dependent oxidoreductase, at 1,694,035 to 1,695,633
_1598
HP15_1599: HP15_1599 - alkylglycerone-phosphate synthase, at 1,695,660 to 1,697,264
_1599
Position (kb)
1694
1695
1696 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1693.135 kb on + strand, within HP15_1597 at 1693.143 kb on - strand, within HP15_1597 at 1693.204 kb on + strand, within HP15_1597 at 1693.344 kb on + strand, within HP15_1597 at 1693.382 kb on + strand, within HP15_1597 at 1693.609 kb on - strand, within HP15_1597 at 1693.687 kb on - strand, within HP15_1597 at 1693.805 kb on + strand, within HP15_1597 at 1693.827 kb on - strand, within HP15_1597 at 1693.867 kb on + strand, within HP15_1597 at 1693.880 kb on + strand, within HP15_1597 at 1693.911 kb on + strand at 1694.053 kb on + strand at 1694.201 kb on + strand, within HP15_1598 at 1694.205 kb on - strand, within HP15_1598 at 1694.223 kb on + strand, within HP15_1598 at 1694.282 kb on - strand, within HP15_1598 at 1694.284 kb on + strand, within HP15_1598 at 1694.287 kb on - strand, within HP15_1598 at 1694.316 kb on + strand, within HP15_1598 at 1694.413 kb on + strand, within HP15_1598 at 1694.414 kb on - strand, within HP15_1598 at 1694.414 kb on - strand, within HP15_1598 at 1694.519 kb on + strand, within HP15_1598 at 1694.519 kb on + strand, within HP15_1598 at 1694.548 kb on - strand, within HP15_1598 at 1694.619 kb on + strand, within HP15_1598 at 1694.625 kb on + strand, within HP15_1598 at 1694.625 kb on + strand, within HP15_1598 at 1694.625 kb on + strand, within HP15_1598 at 1694.633 kb on - strand, within HP15_1598 at 1694.806 kb on + strand, within HP15_1598 at 1694.814 kb on - strand, within HP15_1598 at 1694.865 kb on + strand, within HP15_1598 at 1694.870 kb on + strand, within HP15_1598 at 1694.873 kb on - strand, within HP15_1598 at 1694.873 kb on - strand, within HP15_1598 at 1694.901 kb on + strand, within HP15_1598 at 1694.903 kb on + strand, within HP15_1598 at 1694.904 kb on - strand, within HP15_1598 at 1694.911 kb on - strand, within HP15_1598 at 1695.028 kb on - strand, within HP15_1598 at 1695.272 kb on + strand, within HP15_1598 at 1695.284 kb on + strand, within HP15_1598 at 1695.292 kb on - strand, within HP15_1598 at 1695.356 kb on - strand, within HP15_1598 at 1695.616 kb on - strand at 1695.698 kb on + strand at 1695.706 kb on - strand at 1695.706 kb on - strand at 1695.714 kb on - strand at 1695.827 kb on + strand, within HP15_1599 at 1695.827 kb on + strand, within HP15_1599 at 1695.835 kb on - strand, within HP15_1599 at 1695.835 kb on - strand, within HP15_1599 at 1696.008 kb on - strand, within HP15_1599 at 1696.032 kb on + strand, within HP15_1599 at 1696.061 kb on + strand, within HP15_1599 at 1696.066 kb on + strand, within HP15_1599 at 1696.180 kb on + strand, within HP15_1599 at 1696.188 kb on - strand, within HP15_1599 at 1696.251 kb on + strand, within HP15_1599 at 1696.363 kb on - strand, within HP15_1599 at 1696.399 kb on - strand, within HP15_1599 at 1696.447 kb on - strand, within HP15_1599 at 1696.461 kb on - strand, within HP15_1599 at 1696.504 kb on - strand, within HP15_1599 at 1696.536 kb on + strand, within HP15_1599 at 1696.544 kb on - strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.571 kb on + strand, within HP15_1599 at 1696.579 kb on - strand, within HP15_1599 at 1696.579 kb on - strand, within HP15_1599 at 1696.579 kb on - strand, within HP15_1599
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,693,135 + HP15_1597 0.42 +1.8 1,693,143 - HP15_1597 0.42 +0.0 1,693,204 + HP15_1597 0.46 +1.5 1,693,344 + HP15_1597 0.55 -1.3 1,693,382 + HP15_1597 0.57 +0.7 1,693,609 - HP15_1597 0.72 -0.8 1,693,687 - HP15_1597 0.77 +1.2 1,693,805 + HP15_1597 0.85 +0.1 1,693,827 - HP15_1597 0.86 -0.4 1,693,867 + HP15_1597 0.89 +0.7 1,693,880 + HP15_1597 0.89 +1.4 1,693,911 + +0.6 1,694,053 + +1.6 1,694,201 + HP15_1598 0.10 -0.3 1,694,205 - HP15_1598 0.11 -1.2 1,694,223 + HP15_1598 0.12 +1.7 1,694,282 - HP15_1598 0.15 +0.6 1,694,284 + HP15_1598 0.16 +1.5 1,694,287 - HP15_1598 0.16 -3.7 1,694,316 + HP15_1598 0.18 -1.6 1,694,413 + HP15_1598 0.24 -0.6 1,694,414 - HP15_1598 0.24 -0.1 1,694,414 - HP15_1598 0.24 -0.3 1,694,519 + HP15_1598 0.30 -0.1 1,694,519 + HP15_1598 0.30 -0.3 1,694,548 - HP15_1598 0.32 +0.9 1,694,619 + HP15_1598 0.37 -0.0 1,694,625 + HP15_1598 0.37 -2.0 1,694,625 + HP15_1598 0.37 -0.3 1,694,625 + HP15_1598 0.37 +1.9 1,694,633 - HP15_1598 0.37 +0.5 1,694,806 + HP15_1598 0.48 -0.9 1,694,814 - HP15_1598 0.49 +1.9 1,694,865 + HP15_1598 0.52 +2.2 1,694,870 + HP15_1598 0.52 -0.2 1,694,873 - HP15_1598 0.52 +0.1 1,694,873 - HP15_1598 0.52 -0.4 1,694,901 + HP15_1598 0.54 -0.2 1,694,903 + HP15_1598 0.54 -0.5 1,694,904 - HP15_1598 0.54 -0.9 1,694,911 - HP15_1598 0.55 -0.7 1,695,028 - HP15_1598 0.62 +1.1 1,695,272 + HP15_1598 0.77 +1.6 1,695,284 + HP15_1598 0.78 -0.8 1,695,292 - HP15_1598 0.79 -0.1 1,695,356 - HP15_1598 0.83 -0.5 1,695,616 - +1.7 1,695,698 + -0.7 1,695,706 - +1.4 1,695,706 - +0.5 1,695,714 - +0.2 1,695,827 + HP15_1599 0.10 -0.5 1,695,827 + HP15_1599 0.10 -0.6 1,695,835 - HP15_1599 0.11 +1.4 1,695,835 - HP15_1599 0.11 +0.0 1,696,008 - HP15_1599 0.22 -0.2 1,696,032 + HP15_1599 0.23 -0.4 1,696,061 + HP15_1599 0.25 +1.7 1,696,066 + HP15_1599 0.25 +1.0 1,696,180 + HP15_1599 0.32 -0.5 1,696,188 - HP15_1599 0.33 -0.6 1,696,251 + HP15_1599 0.37 -0.7 1,696,363 - HP15_1599 0.44 -0.3 1,696,399 - HP15_1599 0.46 +1.7 1,696,447 - HP15_1599 0.49 +1.5 1,696,461 - HP15_1599 0.50 +1.5 1,696,504 - HP15_1599 0.53 +0.9 1,696,536 + HP15_1599 0.55 -0.8 1,696,544 - HP15_1599 0.55 +1.8 1,696,571 + HP15_1599 0.57 -0.5 1,696,571 + HP15_1599 0.57 -0.2 1,696,571 + HP15_1599 0.57 +0.7 1,696,571 + HP15_1599 0.57 -0.3 1,696,571 + HP15_1599 0.57 +1.6 1,696,571 + HP15_1599 0.57 +1.6 1,696,571 + HP15_1599 0.57 +2.1 1,696,579 - HP15_1599 0.57 +1.1 1,696,579 - HP15_1599 0.57 -0.3 1,696,579 - HP15_1599 0.57 +1.2
Or see this region's nucleotide sequence