Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0151

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0150 and Psest_0151 are separated by 357 nucleotidesPsest_0151 and Psest_0152 are separated by 129 nucleotidesPsest_0152 and Psest_0153 overlap by 1 nucleotides Psest_0150: Psest_0150 - ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components, at 148,970 to 150,301 _0150 Psest_0151: Psest_0151 - Response regulator with putative antiterminator output domain, at 150,659 to 151,969 _0151 Psest_0152: Psest_0152 - Imidazoleglycerol-phosphate dehydratase, at 152,099 to 152,692 _0152 Psest_0153: Psest_0153 - imidazole glycerol phosphate synthase, glutamine amidotransferase subunit, at 152,692 to 153,330 _0153 Position (kb) 150 151 152Strain fitness (log2 ratio) -1 0 1 2 3at 149.829 kb on + strand, within Psest_0150at 149.935 kb on - strand, within Psest_0150at 150.032 kb on + strand, within Psest_0150at 150.033 kb on - strand, within Psest_0150at 150.033 kb on - strand, within Psest_0150at 150.033 kb on - strand, within Psest_0150at 150.033 kb on - strand, within Psest_0150at 150.054 kb on + strand, within Psest_0150at 150.054 kb on + strand, within Psest_0150at 150.055 kb on - strand, within Psest_0150at 150.055 kb on - strand, within Psest_0150at 150.725 kb on + strandat 150.725 kb on + strandat 150.726 kb on - strandat 150.726 kb on - strandat 150.789 kb on + strandat 150.790 kb on - strand, within Psest_0151at 150.790 kb on - strand, within Psest_0151at 150.790 kb on - strand, within Psest_0151at 150.912 kb on - strand, within Psest_0151at 150.912 kb on - strand, within Psest_0151at 151.299 kb on - strand, within Psest_0151at 151.654 kb on - strand, within Psest_0151at 151.654 kb on - strand, within Psest_0151at 151.809 kb on + strand, within Psest_0151at 151.809 kb on + strand, within Psest_0151at 151.809 kb on + strand, within Psest_0151at 151.809 kb on + strand, within Psest_0151at 151.809 kb on + strand, within Psest_0151at 151.809 kb on + strand, within Psest_0151at 151.810 kb on - strand, within Psest_0151at 151.862 kb on - strandat 152.058 kb on + strandat 152.058 kb on + strandat 152.059 kb on - strandat 152.059 kb on - strandat 152.060 kb on + strandat 152.060 kb on + strandat 152.060 kb on + strandat 152.060 kb on + strandat 152.060 kb on + strandat 152.061 kb on - strandat 152.061 kb on - strandat 152.111 kb on - strandat 152.111 kb on - strandat 152.111 kb on - strandat 152.117 kb on + strandat 152.117 kb on + strandat 152.118 kb on - strandat 152.118 kb on - strandat 152.118 kb on - strandat 152.121 kb on + strandat 152.122 kb on - strandat 152.122 kb on - strandat 152.122 kb on - strandat 152.339 kb on - strand, within Psest_0152at 152.339 kb on - strand, within Psest_0152at 152.387 kb on + strand, within Psest_0152at 152.387 kb on + strand, within Psest_0152at 152.388 kb on - strand, within Psest_0152at 152.388 kb on - strand, within Psest_0152at 152.465 kb on + strand, within Psest_0152at 152.466 kb on - strand, within Psest_0152at 152.466 kb on - strand, within Psest_0152at 152.555 kb on - strand, within Psest_0152at 152.690 kb on + strandat 152.691 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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149,829 + Psest_0150 0.64 -0.9
149,935 - Psest_0150 0.72 +1.9
150,032 + Psest_0150 0.80 +0.3
150,033 - Psest_0150 0.80 +2.5
150,033 - Psest_0150 0.80 +1.7
150,033 - Psest_0150 0.80 +0.3
150,033 - Psest_0150 0.80 +0.3
150,054 + Psest_0150 0.81 +0.7
150,054 + Psest_0150 0.81 -1.3
150,055 - Psest_0150 0.81 +2.7
150,055 - Psest_0150 0.81 +3.2
150,725 + -0.4
150,725 + +2.5
150,726 - +3.2
150,726 - +0.1
150,789 + -0.7
150,790 - Psest_0151 0.10 +0.5
150,790 - Psest_0151 0.10 +1.3
150,790 - Psest_0151 0.10 -1.1
150,912 - Psest_0151 0.19 -0.2
150,912 - Psest_0151 0.19 -0.4
151,299 - Psest_0151 0.49 -1.7
151,654 - Psest_0151 0.76 +2.3
151,654 - Psest_0151 0.76 -0.3
151,809 + Psest_0151 0.88 +0.8
151,809 + Psest_0151 0.88 +2.5
151,809 + Psest_0151 0.88 +1.6
151,809 + Psest_0151 0.88 -1.3
151,809 + Psest_0151 0.88 +0.9
151,809 + Psest_0151 0.88 -0.8
151,810 - Psest_0151 0.88 +1.9
151,862 - +1.5
152,058 + -0.1
152,058 + -0.7
152,059 - +2.7
152,059 - +0.1
152,060 + +1.9
152,060 + +2.5
152,060 + -0.4
152,060 + +3.3
152,060 + +1.9
152,061 - -0.8
152,061 - +2.3
152,111 - -0.1
152,111 - +1.9
152,111 - +2.4
152,117 + +0.7
152,117 + -1.4
152,118 - +1.0
152,118 - +2.8
152,118 - -0.9
152,121 + -0.1
152,122 - +0.9
152,122 - +0.5
152,122 - +0.3
152,339 - Psest_0152 0.40 +0.2
152,339 - Psest_0152 0.40 -1.4
152,387 + Psest_0152 0.48 -1.1
152,387 + Psest_0152 0.48 +2.1
152,388 - Psest_0152 0.49 -0.1
152,388 - Psest_0152 0.49 +2.6
152,465 + Psest_0152 0.62 +0.3
152,466 - Psest_0152 0.62 +3.4
152,466 - Psest_0152 0.62 +1.0
152,555 - Psest_0152 0.77 +2.9
152,690 + +1.1
152,691 - +2.4

Or see this region's nucleotide sequence