Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0147

Experiment: Furfuryl Alcohol 0.05 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_0146 and Psest_0147 are separated by 191 nucleotidesPsest_0147 and Psest_0148 are separated by 88 nucleotidesPsest_0148 and Psest_0149 are separated by 11 nucleotides Psest_0146: Psest_0146 - Uncharacterized protein involved in outer membrane biogenesis, at 144,376 to 146,601 _0146 Psest_0147: Psest_0147 - Acetyltransferase, GNAT family., at 146,793 to 147,191 _0147 Psest_0148: Psest_0148 - nitrate transport ATP-binding subunits C and D, at 147,280 to 148,062 _0148 Psest_0149: Psest_0149 - nitrate ABC transporter, permease protein, at 148,074 to 148,943 _0149 Position (kb) 146 147 148Strain fitness (log2 ratio) -1 0 1 2 3 4 5at 146.030 kb on + strand, within Psest_0146at 146.031 kb on - strand, within Psest_0146at 146.031 kb on - strand, within Psest_0146at 146.057 kb on + strand, within Psest_0146at 146.058 kb on - strand, within Psest_0146at 146.058 kb on - strand, within Psest_0146at 146.058 kb on - strand, within Psest_0146at 146.498 kb on + strandat 146.498 kb on + strandat 146.498 kb on + strandat 146.498 kb on + strandat 146.498 kb on + strandat 146.498 kb on + strandat 146.498 kb on + strandat 146.499 kb on - strandat 146.499 kb on - strandat 146.499 kb on - strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.615 kb on + strandat 146.616 kb on - strandat 146.616 kb on - strandat 146.616 kb on - strandat 146.642 kb on + strandat 146.643 kb on - strandat 146.643 kb on - strandat 146.644 kb on + strandat 146.644 kb on + strandat 146.644 kb on + strandat 146.795 kb on - strandat 147.087 kb on - strand, within Psest_0147at 147.091 kb on + strand, within Psest_0147at 147.091 kb on + strand, within Psest_0147at 147.092 kb on - strand, within Psest_0147at 147.124 kb on + strand, within Psest_0147at 147.124 kb on + strand, within Psest_0147at 147.124 kb on + strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.125 kb on - strand, within Psest_0147at 147.145 kb on - strand, within Psest_0147at 147.181 kb on + strandat 147.181 kb on + strandat 147.181 kb on + strandat 147.182 kb on - strandat 147.231 kb on + strandat 147.338 kb on + strandat 147.338 kb on + strandat 147.339 kb on - strandat 147.339 kb on - strandat 147.339 kb on - strandat 147.662 kb on + strand, within Psest_0148at 147.662 kb on + strand, within Psest_0148at 147.663 kb on - strand, within Psest_0148at 147.783 kb on - strand, within Psest_0148at 148.055 kb on + strandat 148.055 kb on + strandat 148.055 kb on + strandat 148.055 kb on + strandat 148.055 kb on + strandat 148.055 kb on + strandat 148.055 kb on + strandat 148.055 kb on + strandat 148.056 kb on - strandat 148.056 kb on - strandat 148.056 kb on - strandat 148.056 kb on - strandat 148.056 kb on - strandat 148.056 kb on - strandat 148.056 kb on - strandat 148.056 kb on - strandat 148.056 kb on - strandat 148.156 kb on + strandat 148.156 kb on + strandat 148.156 kb on + strandat 148.156 kb on + strandat 148.157 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
remove
146,030 + Psest_0146 0.74 -0.6
146,031 - Psest_0146 0.74 +1.2
146,031 - Psest_0146 0.74 +1.3
146,057 + Psest_0146 0.76 +1.2
146,058 - Psest_0146 0.76 +0.8
146,058 - Psest_0146 0.76 -0.3
146,058 - Psest_0146 0.76 +1.9
146,498 + +1.4
146,498 + -1.1
146,498 + -0.1
146,498 + -0.7
146,498 + -0.9
146,498 + +0.9
146,498 + -0.1
146,499 - +2.3
146,499 - +0.6
146,499 - +1.7
146,615 + +1.5
146,615 + +2.1
146,615 + +0.9
146,615 + +0.9
146,615 + +0.1
146,615 + -0.7
146,615 + +1.2
146,615 + +1.1
146,615 + -0.4
146,616 - +0.6
146,616 - +0.6
146,616 - -0.1
146,642 + +0.9
146,643 - +0.5
146,643 - +3.0
146,644 + +0.3
146,644 + +1.3
146,644 + +0.3
146,795 - +1.6
147,087 - Psest_0147 0.74 +2.8
147,091 + Psest_0147 0.75 +2.9
147,091 + Psest_0147 0.75 +0.3
147,092 - Psest_0147 0.75 +0.6
147,124 + Psest_0147 0.83 -0.4
147,124 + Psest_0147 0.83 -0.4
147,124 + Psest_0147 0.83 -0.4
147,125 - Psest_0147 0.83 +1.9
147,125 - Psest_0147 0.83 +1.6
147,125 - Psest_0147 0.83 +0.7
147,125 - Psest_0147 0.83 -0.1
147,125 - Psest_0147 0.83 +0.6
147,125 - Psest_0147 0.83 +1.7
147,145 - Psest_0147 0.88 +3.1
147,181 + -0.3
147,181 + +0.2
147,181 + -0.9
147,182 - -1.2
147,231 + +3.3
147,338 + -0.1
147,338 + +1.7
147,339 - +0.3
147,339 - +0.3
147,339 - -0.7
147,662 + Psest_0148 0.49 +2.0
147,662 + Psest_0148 0.49 +0.9
147,663 - Psest_0148 0.49 +0.1
147,783 - Psest_0148 0.64 +0.9
148,055 + +0.3
148,055 + +5.0
148,055 + -1.1
148,055 + +2.4
148,055 + -1.1
148,055 + +0.9
148,055 + -1.6
148,055 + +0.6
148,056 - +0.1
148,056 - +2.6
148,056 - +0.6
148,056 - +2.9
148,056 - +1.2
148,056 - +0.9
148,056 - +1.8
148,056 - -0.4
148,056 - -0.1
148,156 + +1.2
148,156 + -0.9
148,156 + +2.0
148,156 + +1.0
148,157 - +0.7

Or see this region's nucleotide sequence