Experiment: Furfuryl Alcohol 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_1443 and Psest_1444 are separated by 21 nucleotides Psest_1444 and Psest_1445 overlap by 4 nucleotides Psest_1445 and Psest_1446 overlap by 4 nucleotides Psest_1446 and Psest_1447 are separated by 246 nucleotides
Psest_1443: Psest_1443 - Uncharacterized protein involved in formation of curli polymers, at 1,553,598 to 1,554,428
_1443
Psest_1444: Psest_1444 - Curli production assembly/transport component CsgF., at 1,554,450 to 1,554,863
_1444
Psest_1445: Psest_1445 - Curli assembly protein CsgE., at 1,554,860 to 1,555,243
_1445
Psest_1446: Psest_1446 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 1,555,240 to 1,555,890
_1446
Psest_1447: Psest_1447 - Putative threonine efflux protein, at 1,556,137 to 1,556,772
_1447
Position (kb)
1554
1555
1556 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1553.920 kb on + strand, within Psest_1443 at 1553.921 kb on - strand, within Psest_1443 at 1554.053 kb on + strand, within Psest_1443 at 1554.232 kb on + strand, within Psest_1443 at 1554.313 kb on + strand, within Psest_1443 at 1554.313 kb on + strand, within Psest_1443 at 1554.313 kb on + strand, within Psest_1443 at 1554.314 kb on - strand, within Psest_1443 at 1554.314 kb on - strand, within Psest_1443 at 1554.314 kb on - strand, within Psest_1443 at 1554.314 kb on - strand, within Psest_1443 at 1554.372 kb on + strand at 1554.390 kb on + strand at 1554.390 kb on + strand at 1554.391 kb on - strand at 1554.391 kb on - strand at 1554.405 kb on + strand at 1554.417 kb on + strand at 1554.532 kb on + strand, within Psest_1444 at 1554.532 kb on + strand, within Psest_1444 at 1554.533 kb on - strand, within Psest_1444 at 1554.778 kb on + strand, within Psest_1444 at 1554.778 kb on + strand, within Psest_1444 at 1554.779 kb on - strand, within Psest_1444 at 1554.863 kb on + strand at 1554.863 kb on + strand at 1554.863 kb on + strand at 1554.864 kb on - strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.884 kb on + strand at 1554.885 kb on - strand at 1554.885 kb on - strand at 1554.885 kb on - strand at 1554.885 kb on - strand at 1554.885 kb on - strand at 1554.885 kb on - strand at 1554.885 kb on - strand at 1554.885 kb on - strand at 1554.885 kb on - strand at 1554.885 kb on - strand at 1554.885 kb on - strand at 1554.885 kb on - strand at 1554.955 kb on - strand, within Psest_1445 at 1555.125 kb on + strand, within Psest_1445 at 1555.125 kb on + strand, within Psest_1445 at 1555.125 kb on + strand, within Psest_1445 at 1555.125 kb on + strand, within Psest_1445 at 1555.125 kb on + strand, within Psest_1445 at 1555.125 kb on + strand, within Psest_1445 at 1555.125 kb on + strand, within Psest_1445 at 1555.126 kb on - strand, within Psest_1445 at 1555.126 kb on - strand, within Psest_1445 at 1555.126 kb on - strand, within Psest_1445 at 1555.126 kb on - strand, within Psest_1445 at 1555.844 kb on - strand at 1555.936 kb on + strand at 1555.936 kb on + strand at 1555.973 kb on + strand at 1555.973 kb on + strand at 1555.973 kb on + strand at 1555.973 kb on + strand at 1555.973 kb on + strand at 1555.974 kb on - strand at 1555.974 kb on - strand at 1556.077 kb on + strand at 1556.077 kb on + strand at 1556.077 kb on + strand at 1556.078 kb on - strand at 1556.216 kb on - strand, within Psest_1447
Per-strain Table
Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol% remove 1,553,920 + Psest_1443 0.39 +0.2 1,553,921 - Psest_1443 0.39 -0.2 1,554,053 + Psest_1443 0.55 -2.7 1,554,232 + Psest_1443 0.76 +0.1 1,554,313 + Psest_1443 0.86 +0.2 1,554,313 + Psest_1443 0.86 -1.3 1,554,313 + Psest_1443 0.86 -0.5 1,554,314 - Psest_1443 0.86 +0.7 1,554,314 - Psest_1443 0.86 +0.1 1,554,314 - Psest_1443 0.86 -1.0 1,554,314 - Psest_1443 0.86 +1.1 1,554,372 + +0.6 1,554,390 + +0.8 1,554,390 + +0.7 1,554,391 - +0.4 1,554,391 - +1.1 1,554,405 + +0.5 1,554,417 + -2.2 1,554,532 + Psest_1444 0.20 -1.4 1,554,532 + Psest_1444 0.20 -1.3 1,554,533 - Psest_1444 0.20 -0.1 1,554,778 + Psest_1444 0.79 -1.8 1,554,778 + Psest_1444 0.79 -0.5 1,554,779 - Psest_1444 0.79 -0.8 1,554,863 + +0.3 1,554,863 + +0.5 1,554,863 + +1.1 1,554,864 - -0.2 1,554,884 + +1.0 1,554,884 + +1.5 1,554,884 + -0.1 1,554,884 + -0.1 1,554,884 + +0.7 1,554,884 + +0.3 1,554,884 + -0.1 1,554,884 + +0.5 1,554,884 + +0.9 1,554,884 + -0.7 1,554,884 + -1.5 1,554,884 + -0.5 1,554,884 + -0.3 1,554,884 + -0.5 1,554,884 + +1.1 1,554,884 + -0.4 1,554,884 + -0.4 1,554,884 + +0.9 1,554,884 + +0.1 1,554,884 + +0.5 1,554,884 + +0.2 1,554,884 + -0.2 1,554,884 + +0.1 1,554,884 + -0.1 1,554,884 + +0.6 1,554,884 + +1.1 1,554,884 + -2.4 1,554,885 - +1.1 1,554,885 - -0.8 1,554,885 - -0.8 1,554,885 - -1.3 1,554,885 - -0.5 1,554,885 - +0.5 1,554,885 - -1.0 1,554,885 - -2.5 1,554,885 - -1.3 1,554,885 - -1.8 1,554,885 - -2.1 1,554,885 - -1.3 1,554,955 - Psest_1445 0.25 -1.0 1,555,125 + Psest_1445 0.69 -2.3 1,555,125 + Psest_1445 0.69 +2.2 1,555,125 + Psest_1445 0.69 -1.1 1,555,125 + Psest_1445 0.69 -0.3 1,555,125 + Psest_1445 0.69 -0.1 1,555,125 + Psest_1445 0.69 -0.7 1,555,125 + Psest_1445 0.69 +3.2 1,555,126 - Psest_1445 0.69 -1.4 1,555,126 - Psest_1445 0.69 -0.8 1,555,126 - Psest_1445 0.69 -0.1 1,555,126 - Psest_1445 0.69 -2.8 1,555,844 - +0.2 1,555,936 + +3.2 1,555,936 + -1.1 1,555,973 + +0.7 1,555,973 + -0.7 1,555,973 + +1.3 1,555,973 + +0.5 1,555,973 + +0.6 1,555,974 - +1.3 1,555,974 - -1.0 1,556,077 + +0.9 1,556,077 + +1.5 1,556,077 + +0.5 1,556,078 - +0.8 1,556,216 - Psest_1447 0.12 +0.3
Or see this region's nucleotide sequence