Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1437

Experiment: Furfuryl Alcohol 0.05 vol%

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsest_1435 and Psest_1436 are separated by 3 nucleotidesPsest_1436 and Psest_1437 are separated by 135 nucleotidesPsest_1437 and Psest_1438 are separated by 56 nucleotides Psest_1435: Psest_1435 - Predicted SAM-dependent methyltransferases, at 1,546,351 to 1,547,289 _1435 Psest_1436: Psest_1436 - Uncharacterized protein conserved in bacteria, at 1,547,293 to 1,547,745 _1436 Psest_1437: Psest_1437 - Uncharacterized protein conserved in archaea, at 1,547,881 to 1,548,399 _1437 Psest_1438: Psest_1438 - Transcriptional regulator, at 1,548,456 to 1,549,415 _1438 Position (kb) 1547 1548 1549Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 1547.008 kb on + strand, within Psest_1435at 1547.009 kb on - strand, within Psest_1435at 1547.581 kb on + strand, within Psest_1436at 1547.581 kb on + strand, within Psest_1436at 1547.582 kb on - strand, within Psest_1436at 1547.627 kb on + strand, within Psest_1436at 1547.627 kb on + strand, within Psest_1436at 1547.628 kb on - strand, within Psest_1436at 1547.628 kb on - strand, within Psest_1436at 1547.628 kb on - strand, within Psest_1436at 1547.678 kb on + strand, within Psest_1436at 1547.745 kb on + strandat 1547.746 kb on - strandat 1547.746 kb on - strandat 1548.209 kb on + strand, within Psest_1437at 1548.209 kb on + strand, within Psest_1437at 1548.210 kb on - strand, within Psest_1437at 1548.361 kb on + strandat 1548.361 kb on + strandat 1548.361 kb on + strandat 1548.361 kb on + strandat 1548.362 kb on - strandat 1548.362 kb on - strandat 1548.362 kb on - strandat 1548.362 kb on - strandat 1548.432 kb on + strandat 1548.432 kb on + strandat 1548.433 kb on - strandat 1548.433 kb on - strandat 1548.433 kb on - strandat 1548.565 kb on + strand, within Psest_1438at 1548.566 kb on - strand, within Psest_1438at 1548.566 kb on - strand, within Psest_1438at 1548.583 kb on + strand, within Psest_1438at 1548.583 kb on + strand, within Psest_1438at 1548.583 kb on + strand, within Psest_1438at 1548.583 kb on + strand, within Psest_1438at 1548.584 kb on - strand, within Psest_1438at 1548.584 kb on - strand, within Psest_1438at 1548.584 kb on - strand, within Psest_1438at 1548.641 kb on + strand, within Psest_1438at 1549.144 kb on - strand, within Psest_1438at 1549.144 kb on - strand, within Psest_1438at 1549.376 kb on - strandat 1549.376 kb on - strandat 1549.376 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
remove
1,547,008 + Psest_1435 0.70 -1.3
1,547,009 - Psest_1435 0.70 -1.5
1,547,581 + Psest_1436 0.64 +2.3
1,547,581 + Psest_1436 0.64 +0.3
1,547,582 - Psest_1436 0.64 +1.0
1,547,627 + Psest_1436 0.74 +4.1
1,547,627 + Psest_1436 0.74 +0.8
1,547,628 - Psest_1436 0.74 +2.6
1,547,628 - Psest_1436 0.74 -1.7
1,547,628 - Psest_1436 0.74 +4.5
1,547,678 + Psest_1436 0.85 +0.7
1,547,745 + -0.5
1,547,746 - +0.2
1,547,746 - +0.2
1,548,209 + Psest_1437 0.63 +0.9
1,548,209 + Psest_1437 0.63 +0.5
1,548,210 - Psest_1437 0.63 -0.1
1,548,361 + +1.3
1,548,361 + -2.4
1,548,361 + +0.3
1,548,361 + -0.8
1,548,362 - +0.7
1,548,362 - -1.1
1,548,362 - -0.1
1,548,362 - +1.3
1,548,432 + +0.5
1,548,432 + -0.8
1,548,433 - -0.0
1,548,433 - -0.3
1,548,433 - +3.6
1,548,565 + Psest_1438 0.11 -0.5
1,548,566 - Psest_1438 0.11 +0.1
1,548,566 - Psest_1438 0.11 +0.0
1,548,583 + Psest_1438 0.13 -0.2
1,548,583 + Psest_1438 0.13 -1.2
1,548,583 + Psest_1438 0.13 +0.8
1,548,583 + Psest_1438 0.13 -2.3
1,548,584 - Psest_1438 0.13 +0.7
1,548,584 - Psest_1438 0.13 +0.5
1,548,584 - Psest_1438 0.13 -0.2
1,548,641 + Psest_1438 0.19 -0.9
1,549,144 - Psest_1438 0.72 +0.7
1,549,144 - Psest_1438 0.72 +1.3
1,549,376 - +0.6
1,549,376 - +0.1
1,549,376 - +0.5

Or see this region's nucleotide sequence