Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1391
Experiment: Furfuryl Alcohol 0.05 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Furfuryl Alcohol 0.05 vol% |
---|---|---|---|---|---|
remove | |||||
1,498,568 | - | -0.5 | |||
1,498,627 | + | Psest_1390 | 0.11 | +0.5 | |
1,498,714 | + | Psest_1390 | 0.20 | -0.1 | |
1,498,835 | - | Psest_1390 | 0.34 | -0.1 | |
1,498,835 | - | Psest_1390 | 0.34 | -0.8 | |
1,499,014 | + | Psest_1390 | 0.53 | +1.5 | |
1,499,014 | + | Psest_1390 | 0.53 | +0.5 | |
1,499,014 | + | Psest_1390 | 0.53 | -0.1 | |
1,499,014 | + | Psest_1390 | 0.53 | +1.3 | |
1,499,015 | - | Psest_1390 | 0.53 | +0.5 | |
1,499,015 | - | Psest_1390 | 0.53 | +1.5 | |
1,499,346 | + | Psest_1390 | 0.89 | +2.1 | |
1,499,426 | + | -0.8 | |||
1,499,427 | - | +0.5 | |||
1,499,427 | - | -1.1 | |||
1,499,427 | - | +3.1 | |||
1,500,015 | + | Psest_1391 | 0.45 | +1.5 | |
1,500,016 | - | Psest_1391 | 0.45 | +0.5 | |
1,500,159 | + | Psest_1391 | 0.58 | +1.5 | |
1,500,159 | + | Psest_1391 | 0.58 | +3.1 | |
1,500,159 | + | Psest_1391 | 0.58 | -0.1 | |
1,500,159 | + | Psest_1391 | 0.58 | +1.5 | |
1,500,159 | + | Psest_1391 | 0.58 | +2.3 | |
1,500,160 | - | Psest_1391 | 0.58 | -0.1 | |
1,500,160 | - | Psest_1391 | 0.58 | -0.7 | |
1,500,160 | - | Psest_1391 | 0.58 | +2.5 | |
1,500,381 | + | Psest_1391 | 0.78 | +2.2 | |
1,500,381 | + | Psest_1391 | 0.78 | +0.3 | |
1,500,382 | - | Psest_1391 | 0.78 | +0.7 | |
1,500,451 | - | Psest_1391 | 0.84 | -0.5 |
Or see this region's nucleotide sequence