Experiment: a-Ketoglutaric (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_1224 and HP15_1225 overlap by 1 nucleotides HP15_1225 and HP15_1226 are separated by 57 nucleotides HP15_1226 and HP15_1227 overlap by 11 nucleotides HP15_1227 and HP15_1228 are separated by 11 nucleotides
HP15_1224: HP15_1224 - glutaredoxin 2, at 1,273,500 to 1,273,733
_1224
HP15_1225: HP15_1225 - oxidoreductase, short chain dehydrogenase/reductase family, at 1,273,733 to 1,274,482
_1225
HP15_1226: HP15_1226 - 2-phosphoglycolate phosphatase, prokaryotic, at 1,274,540 to 1,275,211
_1226
HP15_1227: HP15_1227 - 3-demethylubiquinone-9 3-methyltransferase, at 1,275,201 to 1,275,941
_1227
HP15_1228: HP15_1228 - chlorohydrolase/deaminase family protein, at 1,275,953 to 1,277,290
_1228
Position (kb)
1274
1275
1276 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1273.542 kb on + strand, within HP15_1224 at 1273.550 kb on - strand, within HP15_1224 at 1273.678 kb on + strand, within HP15_1224 at 1273.698 kb on - strand, within HP15_1224 at 1274.002 kb on - strand, within HP15_1225 at 1274.092 kb on - strand, within HP15_1225 at 1274.189 kb on - strand, within HP15_1225 at 1274.270 kb on - strand, within HP15_1225 at 1274.390 kb on - strand, within HP15_1225 at 1274.484 kb on + strand at 1274.486 kb on - strand at 1275.206 kb on - strand at 1275.916 kb on - strand at 1275.936 kb on - strand at 1275.984 kb on - strand at 1276.158 kb on - strand, within HP15_1228 at 1276.158 kb on - strand, within HP15_1228
Per-strain Table
Position Strand Gene LocusTag Fraction a-Ketoglutaric (C) remove 1,273,542 + HP15_1224 0.18 -0.2 1,273,550 - HP15_1224 0.21 -0.5 1,273,678 + HP15_1224 0.76 +0.8 1,273,698 - HP15_1224 0.85 +0.3 1,274,002 - HP15_1225 0.36 +0.3 1,274,092 - HP15_1225 0.48 +0.6 1,274,189 - HP15_1225 0.61 -2.3 1,274,270 - HP15_1225 0.72 +1.8 1,274,390 - HP15_1225 0.88 +0.8 1,274,484 + -0.3 1,274,486 - -0.5 1,275,206 - -0.4 1,275,916 - +0.5 1,275,936 - -0.1 1,275,984 - +0.4 1,276,158 - HP15_1228 0.15 -0.4 1,276,158 - HP15_1228 0.15 +0.0
Or see this region's nucleotide sequence