Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1051

Experiment: Furfuryl Alcohol 0.05 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1050 and Psest_1051 are separated by 106 nucleotidesPsest_1051 and Psest_1052 overlap by 4 nucleotidesPsest_1052 and Psest_1053 are separated by 108 nucleotides Psest_1050: Psest_1050 - Paraquat-inducible protein B, at 1,134,974 to 1,137,283 _1050 Psest_1051: Psest_1051 - hypothetical protein, at 1,137,390 to 1,140,224 _1051 Psest_1052: Psest_1052 - Uncharacterized protein involved in chromosome partitioning, at 1,140,221 to 1,140,910 _1052 Psest_1053: Psest_1053 - hypothetical protein, at 1,141,019 to 1,142,260 _1053 Position (kb) 1137 1138 1139 1140 1141Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1136.589 kb on - strand, within Psest_1050at 1136.589 kb on - strand, within Psest_1050at 1136.649 kb on + strand, within Psest_1050at 1136.649 kb on + strand, within Psest_1050at 1136.649 kb on + strand, within Psest_1050at 1136.649 kb on + strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.650 kb on - strand, within Psest_1050at 1136.778 kb on - strand, within Psest_1050at 1136.927 kb on + strand, within Psest_1050at 1136.928 kb on - strand, within Psest_1050at 1136.928 kb on - strand, within Psest_1050at 1137.302 kb on + strandat 1137.302 kb on + strandat 1137.302 kb on + strandat 1137.329 kb on - strandat 1137.461 kb on - strandat 1137.461 kb on - strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.484 kb on + strandat 1137.485 kb on - strandat 1137.485 kb on - strandat 1137.485 kb on - strandat 1137.485 kb on - strandat 1137.485 kb on - strandat 1137.485 kb on - strandat 1137.643 kb on + strandat 1137.643 kb on + strandat 1137.644 kb on - strandat 1137.644 kb on - strandat 1137.644 kb on - strandat 1137.644 kb on - strandat 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.700 kb on + strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.701 kb on - strand, within Psest_1051at 1137.868 kb on + strand, within Psest_1051at 1137.869 kb on - strand, within Psest_1051at 1137.949 kb on + strand, within Psest_1051at 1138.276 kb on + strand, within Psest_1051at 1138.277 kb on - strand, within Psest_1051at 1138.277 kb on - strand, within Psest_1051at 1138.277 kb on - strand, within Psest_1051at 1138.331 kb on - strand, within Psest_1051at 1138.669 kb on + strand, within Psest_1051at 1138.965 kb on + strand, within Psest_1051at 1139.021 kb on - strand, within Psest_1051at 1139.338 kb on + strand, within Psest_1051at 1139.339 kb on - strand, within Psest_1051at 1139.339 kb on - strand, within Psest_1051at 1139.383 kb on + strand, within Psest_1051at 1139.569 kb on + strand, within Psest_1051at 1139.569 kb on + strand, within Psest_1051at 1139.569 kb on + strandat 1139.748 kb on - strand, within Psest_1051at 1139.748 kb on - strand, within Psest_1051at 1139.748 kb on - strand, within Psest_1051at 1139.748 kb on - strand, within Psest_1051at 1139.772 kb on + strand, within Psest_1051at 1139.773 kb on - strand, within Psest_1051at 1139.866 kb on + strand, within Psest_1051at 1139.989 kb on + strandat 1139.989 kb on + strandat 1139.990 kb on - strandat 1139.990 kb on - strandat 1139.990 kb on - strandat 1139.990 kb on - strandat 1139.990 kb on - strandat 1140.010 kb on + strandat 1140.037 kb on + strandat 1140.037 kb on + strandat 1140.451 kb on - strand, within Psest_1052at 1140.558 kb on + strand, within Psest_1052at 1140.558 kb on + strand, within Psest_1052at 1140.558 kb on + strand, within Psest_1052at 1140.559 kb on - strand, within Psest_1052at 1140.559 kb on - strand, within Psest_1052at 1140.726 kb on + strand, within Psest_1052at 1140.726 kb on + strand, within Psest_1052at 1140.727 kb on - strand, within Psest_1052at 1140.730 kb on - strand, within Psest_1052at 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.910 kb on + strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.911 kb on - strandat 1140.934 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Furfuryl Alcohol 0.05 vol%
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1,136,589 - Psest_1050 0.70 -1.4
1,136,589 - Psest_1050 0.70 -0.8
1,136,649 + Psest_1050 0.73 +0.2
1,136,649 + Psest_1050 0.73 -1.0
1,136,649 + Psest_1050 0.73 -0.0
1,136,649 + Psest_1050 0.73 -0.8
1,136,650 - Psest_1050 0.73 +1.1
1,136,650 - Psest_1050 0.73 -2.2
1,136,650 - Psest_1050 0.73 -2.5
1,136,650 - Psest_1050 0.73 +0.6
1,136,650 - Psest_1050 0.73 -2.4
1,136,650 - Psest_1050 0.73 -1.3
1,136,778 - Psest_1050 0.78 -1.4
1,136,927 + Psest_1050 0.85 -1.0
1,136,928 - Psest_1050 0.85 +0.2
1,136,928 - Psest_1050 0.85 +0.8
1,137,302 + +0.8
1,137,302 + +1.1
1,137,302 + -0.8
1,137,329 - -0.4
1,137,461 - -2.7
1,137,461 - -0.8
1,137,484 + -1.3
1,137,484 + +1.0
1,137,484 + +0.1
1,137,484 + -0.8
1,137,484 + +0.6
1,137,484 + -0.8
1,137,484 + -1.9
1,137,484 + +1.1
1,137,484 + +0.8
1,137,485 - -1.7
1,137,485 - +0.6
1,137,485 - -1.3
1,137,485 - -0.8
1,137,485 - -0.0
1,137,485 - +1.1
1,137,643 + -0.3
1,137,643 + -0.0
1,137,644 - +1.3
1,137,644 - +0.6
1,137,644 - +1.0
1,137,644 - -0.0
1,137,700 + Psest_1051 0.11 -0.1
1,137,700 + Psest_1051 0.11 +2.1
1,137,700 + Psest_1051 0.11 +0.6
1,137,700 + Psest_1051 0.11 -0.0
1,137,700 + Psest_1051 0.11 -0.4
1,137,700 + Psest_1051 0.11 +0.6
1,137,700 + Psest_1051 0.11 -0.4
1,137,700 + Psest_1051 0.11 +1.0
1,137,700 + Psest_1051 0.11 +0.6
1,137,700 + Psest_1051 0.11 -1.6
1,137,700 + Psest_1051 0.11 +0.6
1,137,700 + Psest_1051 0.11 +0.7
1,137,701 - Psest_1051 0.11 -1.8
1,137,701 - Psest_1051 0.11 -1.0
1,137,701 - Psest_1051 0.11 +0.5
1,137,701 - Psest_1051 0.11 -2.4
1,137,701 - Psest_1051 0.11 -0.5
1,137,701 - Psest_1051 0.11 -0.4
1,137,701 - Psest_1051 0.11 -1.8
1,137,701 - Psest_1051 0.11 -1.6
1,137,701 - Psest_1051 0.11 +0.2
1,137,701 - Psest_1051 0.11 -1.7
1,137,701 - Psest_1051 0.11 -1.4
1,137,701 - Psest_1051 0.11 -0.0
1,137,701 - Psest_1051 0.11 +1.7
1,137,701 - Psest_1051 0.11 +2.3
1,137,701 - Psest_1051 0.11 -2.2
1,137,701 - Psest_1051 0.11 -1.4
1,137,701 - Psest_1051 0.11 -2.0
1,137,701 - Psest_1051 0.11 -0.8
1,137,868 + Psest_1051 0.17 -1.6
1,137,869 - Psest_1051 0.17 -1.0
1,137,949 + Psest_1051 0.20 +1.9
1,138,276 + Psest_1051 0.31 -0.8
1,138,277 - Psest_1051 0.31 -0.4
1,138,277 - Psest_1051 0.31 -1.4
1,138,277 - Psest_1051 0.31 -0.8
1,138,331 - Psest_1051 0.33 -2.4
1,138,669 + Psest_1051 0.45 -1.3
1,138,965 + Psest_1051 0.56 +1.6
1,139,021 - Psest_1051 0.58 +0.6
1,139,338 + Psest_1051 0.69 -0.8
1,139,339 - Psest_1051 0.69 +0.6
1,139,339 - Psest_1051 0.69 -0.0
1,139,383 + Psest_1051 0.70 -0.0
1,139,569 + Psest_1051 0.77 +2.5
1,139,569 + Psest_1051 0.77 -0.6
1,139,569 + +1.6
1,139,748 - Psest_1051 0.83 +3.1
1,139,748 - Psest_1051 0.83 +1.4
1,139,748 - Psest_1051 0.83 -0.8
1,139,748 - Psest_1051 0.83 +3.1
1,139,772 + Psest_1051 0.84 -1.0
1,139,773 - Psest_1051 0.84 +0.6
1,139,866 + Psest_1051 0.87 +3.1
1,139,989 + -0.4
1,139,989 + +0.6
1,139,990 - -0.4
1,139,990 - +2.0
1,139,990 - +1.6
1,139,990 - +1.1
1,139,990 - +3.1
1,140,010 + -0.0
1,140,037 + -0.8
1,140,037 + -1.0
1,140,451 - Psest_1052 0.33 -0.8
1,140,558 + Psest_1052 0.49 +0.2
1,140,558 + Psest_1052 0.49 -0.4
1,140,558 + Psest_1052 0.49 -0.4
1,140,559 - Psest_1052 0.49 -1.3
1,140,559 - Psest_1052 0.49 +1.6
1,140,726 + Psest_1052 0.73 -0.4
1,140,726 + Psest_1052 0.73 +1.6
1,140,727 - Psest_1052 0.73 -0.4
1,140,730 - Psest_1052 0.74 +1.6
1,140,910 + +0.2
1,140,910 + +1.2
1,140,910 + +1.6
1,140,910 + +1.4
1,140,910 + -0.0
1,140,910 + +1.6
1,140,910 + +1.0
1,140,910 + +1.6
1,140,910 + +1.6
1,140,910 + -1.3
1,140,910 + +1.0
1,140,910 + +1.6
1,140,910 + -0.4
1,140,910 + -0.4
1,140,910 + -0.8
1,140,910 + +1.6
1,140,910 + +0.6
1,140,910 + -1.3
1,140,911 - +1.7
1,140,911 - +0.8
1,140,911 - -1.0
1,140,911 - +0.2
1,140,911 - -1.6
1,140,911 - -0.0
1,140,911 - -0.3
1,140,911 - +0.2
1,140,911 - +1.6
1,140,911 - +0.6
1,140,911 - +1.0
1,140,911 - +1.7
1,140,911 - +0.6
1,140,911 - +1.6
1,140,911 - +0.7
1,140,911 - -0.0
1,140,911 - +0.4
1,140,911 - +1.6
1,140,911 - +1.1
1,140,911 - +0.6
1,140,934 - -1.4

Or see this region's nucleotide sequence