Experiment: LB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1980 and Sama_1981 are separated by 11 nucleotides Sama_1981 and Sama_1982 are separated by 57 nucleotides Sama_1982 and Sama_1983 are separated by 14 nucleotides
Sama_1980: Sama_1980 - 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq), at 2,408,589 to 2,409,335
_1980
Sama_1981: Sama_1981 - malonyl CoA-acyl carrier protein transacylase (RefSeq), at 2,409,347 to 2,410,273
_1981
Sama_1982: Sama_1982 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 2,410,331 to 2,411,290
_1982
Sama_1983: Sama_1983 - putative glycerol-3-phosphate acyltransferase PlsX (RefSeq), at 2,411,305 to 2,412,333
_1983
Position (kb)
2410
2411
2412 Strain fitness (log2 ratio)
-2
-1
0
1 at 2409.349 kb on - strand at 2409.375 kb on - strand at 2409.375 kb on - strand at 2410.496 kb on - strand, within Sama_1982 at 2410.496 kb on - strand, within Sama_1982 at 2410.535 kb on - strand, within Sama_1982 at 2410.537 kb on + strand, within Sama_1982 at 2410.753 kb on - strand, within Sama_1982 at 2411.321 kb on - strand at 2411.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB remove 2,409,349 - +0.9 2,409,375 - -0.4 2,409,375 - -0.1 2,410,496 - Sama_1982 0.17 -1.9 2,410,496 - Sama_1982 0.17 -0.7 2,410,535 - Sama_1982 0.21 -0.1 2,410,537 + Sama_1982 0.21 -1.5 2,410,753 - Sama_1982 0.44 -1.2 2,411,321 - -0.6 2,411,321 - -0.5
Or see this region's nucleotide sequence