Strain Fitness in Shewanella amazonensis SB2B around Sama_1151

Experiment: LB

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1149 and fabZ are separated by 44 nucleotidesfabZ and Sama_1151 overlap by 4 nucleotidesSama_1151 and lpxB are separated by 26 nucleotides Sama_1149: Sama_1149 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase (RefSeq), at 1,399,831 to 1,400,856 _1149 Sama_1150: fabZ - (3R)-hydroxymyristoyl-ACP dehydratase (RefSeq), at 1,400,901 to 1,401,362 fabZ Sama_1151: Sama_1151 - UDP-N-acetylglucosamine acyltransferase (RefSeq), at 1,401,359 to 1,402,129 _1151 Sama_1152: lpxB - lipid-A-disaccharide synthase (RefSeq), at 1,402,156 to 1,403,337 lpxB Position (kb) 1401 1402 1403Strain fitness (log2 ratio) -1 0 1at 1400.854 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB
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1,400,854 + +0.2

Or see this region's nucleotide sequence