Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0920

Experiment: Vanillin 2 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 2 mM
1,000,123	+		Psest_0919	0.47	-0.1
1,000,124	-		Psest_0919	0.47	-0.3
1,000,124	-		Psest_0919	0.47	+0.3
1,000,260	+		Psest_0919	0.62	+0.4
1,000,570	+				-0.4
1,000,571	-				-0.7
1,000,607	+				-0.5
1,000,608	-				+1.2
1,000,608	-				-0.4
1,000,608	-				-0.0
1,000,643	+				-0.0
1,000,644	-				+0.1
1,000,644	-				+1.3
1,000,647	+				+0.1
1,000,648	-				-0.1
1,000,648	-				+0.5
1,000,648	-				+0.2
1,000,648	-				+0.2
1,000,967	+		Psest_0920	0.42	+0.0
1,000,967	+		Psest_0920	0.42	+0.1
1,000,967	+		Psest_0920	0.42	+0.1
1,000,967	+		Psest_0920	0.42	+0.2
1,000,967	+		Psest_0920	0.42	-0.5
1,000,967	+		Psest_0920	0.42	+0.6
1,000,967	+		Psest_0920	0.42	+0.2
1,000,967	+		Psest_0920	0.42	+0.2
1,000,968	-		Psest_0920	0.42	+0.5
1,000,968	-		Psest_0920	0.42	-0.0
1,000,968	-		Psest_0920	0.42	+0.5
1,000,968	-		Psest_0920	0.42	-0.8
1,000,968	-		Psest_0920	0.42	+0.1
1,000,968	-		Psest_0920	0.42	+1.1
1,000,968	-		Psest_0920	0.42	-0.3
1,000,997	+		Psest_0920	0.48	+1.1
1,001,059	+		Psest_0920	0.60	-0.1
1,001,059	+		Psest_0920	0.60	+0.6
1,001,059	+		Psest_0920	0.60	-2.4
1,001,059	+		Psest_0920	0.60	+1.0
1,001,059	+		Psest_0920	0.60	+1.3
1,001,060	-		Psest_0920	0.61	-0.8
1,001,060	-		Psest_0920	0.61	+0.2
1,001,083	+		Psest_0920	0.65	+0.1
1,001,084	-		Psest_0920	0.66	-1.2
1,001,084	-		Psest_0920	0.66	+0.6
1,001,204	-				+0.2
1,001,286	+				+1.0
1,001,286	+				+0.8
1,001,286	+				+0.9
1,001,286	+				+0.8
1,001,286	+				+0.3
1,001,286	+				-0.9
1,001,287	-				-1.7
1,001,287	-				-0.5
1,001,289	+				+0.2
1,001,290	-				-0.3
1,001,290	-				+0.3
1,001,290	-				+0.1
1,001,313	+				-0.3
1,001,313	+				+0.1
1,001,313	+				+1.8
1,001,314	-				-0.6
1,001,314	-				-0.1
1,001,495	+		Psest_0921	0.20	-0.3
1,001,495	+		Psest_0921	0.20	+0.0
1,001,495	+		Psest_0921	0.20	-0.3
1,001,495	+		Psest_0921	0.20	+0.2
1,001,495	+		Psest_0921	0.20	+0.3
1,001,496	-		Psest_0921	0.20	-0.0
1,001,496	-		Psest_0921	0.20	+0.4
1,001,496	-		Psest_0921	0.20	-0.3
1,001,496	-		Psest_0921	0.20	-0.8
1,001,496	-		Psest_0921	0.20	-0.2
1,001,496	-		Psest_0921	0.20	+0.5
1,001,496	-		Psest_0921	0.20	+1.3
1,001,499	+		Psest_0921	0.21	+0.0
1,001,500	-		Psest_0921	0.21	+0.4
1,001,500	-		Psest_0921	0.21	+0.2
1,001,971	+		Psest_0921	0.78	+0.6
1,001,971	+		Psest_0921	0.78	+0.8
1,001,972	-		Psest_0921	0.78	+0.1
1,001,989	-		Psest_0921	0.80	+0.1
1,002,099	+				-0.1
1,002,099	+				+0.8
1,002,099	+				-0.3
1,002,100	-				+0.8
1,002,102	+				+0.9
1,002,102	+				+0.1
1,002,102	+				+0.3
1,002,102	+				-2.2
1,002,102	+				+0.1
1,002,103	-				+0.6
1,002,103	-				-0.6
1,002,103	-				+0.1
1,002,103	-				+0.3
1,002,103	-				+0.9
1,002,103	-				+0.0
1,002,103	-				+0.3
1,002,103	-				-1.0
1,002,103	-				+0.5
1,002,106	+				-1.1
1,002,106	+				+0.1
1,002,186	+				+0.6
1,002,186	+				-0.2
1,002,187	-				-0.2