Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0851

Experiment: Vanillin 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0850 and Psest_0851 are separated by 72 nucleotidesPsest_0851 and Psest_0852 are separated by 171 nucleotides Psest_0850: Psest_0850 - glucokinase, proteobacterial type, at 920,458 to 921,417 _0850 Psest_0851: Psest_0851 - Transcriptional regulators, at 921,490 to 922,359 _0851 Psest_0852: Psest_0852 - glucose-6-phosphate 1-dehydrogenase, at 922,531 to 924,000 _0852 Position (kb) 921 922 923Strain fitness (log2 ratio) -2 -1 0 1 2at 920.587 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.590 kb on + strand, within Psest_0850at 920.591 kb on - strand, within Psest_0850at 920.778 kb on + strand, within Psest_0850at 920.778 kb on + strand, within Psest_0850at 921.055 kb on + strand, within Psest_0850at 921.055 kb on + strand, within Psest_0850at 921.060 kb on + strand, within Psest_0850at 921.060 kb on + strand, within Psest_0850at 921.060 kb on + strand, within Psest_0850at 921.061 kb on - strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.232 kb on + strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.233 kb on - strand, within Psest_0850at 921.453 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.455 kb on + strandat 921.456 kb on - strandat 921.456 kb on - strandat 921.542 kb on - strandat 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.647 kb on + strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.648 kb on - strand, within Psest_0851at 921.797 kb on + strand, within Psest_0851at 922.067 kb on + strand, within Psest_0851at 922.067 kb on + strand, within Psest_0851at 922.068 kb on - strand, within Psest_0851at 922.068 kb on - strand, within Psest_0851at 922.348 kb on + strandat 922.399 kb on + strandat 922.399 kb on + strandat 922.399 kb on + strandat 922.542 kb on - strandat 922.542 kb on - strandat 922.618 kb on + strandat 922.619 kb on - strandat 922.793 kb on - strand, within Psest_0852at 922.897 kb on + strand, within Psest_0852at 923.041 kb on + strand, within Psest_0852at 923.041 kb on + strand, within Psest_0852at 923.056 kb on + strand, within Psest_0852

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2 mM
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920,587 + Psest_0850 0.13 -1.1
920,590 + Psest_0850 0.14 -0.4
920,590 + Psest_0850 0.14 -0.6
920,590 + Psest_0850 0.14 +1.1
920,590 + Psest_0850 0.14 +1.1
920,590 + Psest_0850 0.14 +0.4
920,591 - Psest_0850 0.14 +0.1
920,778 + Psest_0850 0.33 +0.1
920,778 + Psest_0850 0.33 +1.1
921,055 + Psest_0850 0.62 -0.9
921,055 + Psest_0850 0.62 -0.3
921,060 + Psest_0850 0.63 +1.6
921,060 + Psest_0850 0.63 +1.1
921,060 + Psest_0850 0.63 +0.6
921,061 - Psest_0850 0.63 +1.1
921,232 + Psest_0850 0.81 -0.7
921,232 + Psest_0850 0.81 -0.0
921,232 + Psest_0850 0.81 -0.4
921,232 + Psest_0850 0.81 -0.2
921,232 + Psest_0850 0.81 +0.6
921,232 + Psest_0850 0.81 -1.4
921,232 + Psest_0850 0.81 +0.4
921,232 + Psest_0850 0.81 -0.7
921,232 + Psest_0850 0.81 -0.2
921,232 + Psest_0850 0.81 -1.4
921,232 + Psest_0850 0.81 -1.9
921,232 + Psest_0850 0.81 -1.2
921,232 + Psest_0850 0.81 -2.6
921,233 - Psest_0850 0.81 -0.4
921,233 - Psest_0850 0.81 +0.7
921,233 - Psest_0850 0.81 +1.1
921,233 - Psest_0850 0.81 +0.1
921,233 - Psest_0850 0.81 +0.1
921,233 - Psest_0850 0.81 +1.1
921,233 - Psest_0850 0.81 +2.1
921,453 + +0.0
921,455 + -0.3
921,455 + +0.1
921,455 + +0.1
921,455 + +1.1
921,455 + -0.2
921,456 - +1.1
921,456 - +0.8
921,542 - +0.1
921,647 + Psest_0851 0.18 +0.7
921,647 + Psest_0851 0.18 -2.4
921,647 + Psest_0851 0.18 +0.1
921,647 + Psest_0851 0.18 -0.4
921,647 + Psest_0851 0.18 -0.9
921,647 + Psest_0851 0.18 +0.4
921,647 + Psest_0851 0.18 +1.1
921,647 + Psest_0851 0.18 +0.7
921,647 + Psest_0851 0.18 +0.1
921,647 + Psest_0851 0.18 -0.4
921,647 + Psest_0851 0.18 -0.4
921,647 + Psest_0851 0.18 +0.1
921,647 + Psest_0851 0.18 -0.1
921,647 + Psest_0851 0.18 +1.9
921,647 + Psest_0851 0.18 -1.7
921,647 + Psest_0851 0.18 +1.1
921,647 + Psest_0851 0.18 -0.5
921,647 + Psest_0851 0.18 -0.4
921,647 + Psest_0851 0.18 -0.0
921,647 + Psest_0851 0.18 +1.7
921,647 + Psest_0851 0.18 +1.1
921,647 + Psest_0851 0.18 -0.4
921,648 - Psest_0851 0.18 -0.9
921,648 - Psest_0851 0.18 -2.3
921,648 - Psest_0851 0.18 -0.9
921,648 - Psest_0851 0.18 +0.6
921,648 - Psest_0851 0.18 +0.4
921,648 - Psest_0851 0.18 +0.7
921,648 - Psest_0851 0.18 -0.1
921,648 - Psest_0851 0.18 -1.4
921,648 - Psest_0851 0.18 -1.2
921,648 - Psest_0851 0.18 -1.5
921,648 - Psest_0851 0.18 +0.1
921,648 - Psest_0851 0.18 +0.1
921,648 - Psest_0851 0.18 +1.1
921,648 - Psest_0851 0.18 +1.1
921,648 - Psest_0851 0.18 -0.4
921,648 - Psest_0851 0.18 -0.9
921,648 - Psest_0851 0.18 -1.3
921,648 - Psest_0851 0.18 +1.1
921,648 - Psest_0851 0.18 -0.7
921,648 - Psest_0851 0.18 +0.4
921,797 + Psest_0851 0.35 -0.6
922,067 + Psest_0851 0.66 +0.1
922,067 + Psest_0851 0.66 +1.7
922,068 - Psest_0851 0.66 +1.1
922,068 - Psest_0851 0.66 -1.6
922,348 + -1.1
922,399 + -0.1
922,399 + -0.4
922,399 + +1.6
922,542 - +0.1
922,542 - -0.6
922,618 + +0.6
922,619 - -0.4
922,793 - Psest_0852 0.18 -0.4
922,897 + Psest_0852 0.25 +0.0
923,041 + Psest_0852 0.35 +1.7
923,041 + Psest_0852 0.35 -0.4
923,056 + Psest_0852 0.36 +0.1

Or see this region's nucleotide sequence