Experiment: Vanillin 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0588 and Psest_0589 overlap by 26 nucleotides Psest_0589 and Psest_0590 are separated by 544 nucleotides
Psest_0588: Psest_0588 - Short-chain dehydrogenases of various substrate specificities, at 638,638 to 639,363
_0588
Psest_0589: Psest_0589 - Uncharacterized protein conserved in bacteria, at 639,338 to 639,793
_0589
Psest_0590: Psest_0590 - hypothetical protein, at 640,338 to 642,005
_0590
Position (kb) 639
640 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 638.444 kb on - strand at 638.469 kb on + strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.470 kb on - strand at 638.503 kb on + strand at 638.651 kb on + strand at 638.681 kb on + strand at 638.681 kb on + strand at 638.681 kb on + strand at 638.682 kb on - strand at 638.684 kb on + strand at 638.894 kb on + strand, within Psest_0588 at 638.894 kb on + strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 638.895 kb on - strand, within Psest_0588 at 639.009 kb on + strand, within Psest_0588 at 639.090 kb on + strand, within Psest_0588 at 639.091 kb on - strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.103 kb on + strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.104 kb on - strand, within Psest_0588 at 639.185 kb on + strand, within Psest_0588 at 639.185 kb on + strand, within Psest_0588 at 639.186 kb on - strand, within Psest_0588 at 639.196 kb on + strand, within Psest_0588 at 639.197 kb on - strand, within Psest_0588 at 639.197 kb on - strand, within Psest_0588 at 639.233 kb on + strand, within Psest_0588 at 639.233 kb on + strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.234 kb on - strand, within Psest_0588 at 639.353 kb on + strand at 639.354 kb on - strand at 639.354 kb on - strand at 639.354 kb on - strand at 639.354 kb on - strand at 639.465 kb on - strand, within Psest_0589 at 639.465 kb on - strand, within Psest_0589 at 639.504 kb on + strand, within Psest_0589 at 639.536 kb on + strand, within Psest_0589 at 639.537 kb on - strand, within Psest_0589 at 639.537 kb on - strand, within Psest_0589 at 639.537 kb on - strand, within Psest_0589 at 639.537 kb on - strand, within Psest_0589 at 639.557 kb on - strand, within Psest_0589 at 639.601 kb on + strand, within Psest_0589 at 639.601 kb on + strand, within Psest_0589 at 639.602 kb on - strand, within Psest_0589 at 639.602 kb on - strand, within Psest_0589 at 639.608 kb on - strand, within Psest_0589 at 639.609 kb on + strand, within Psest_0589 at 639.609 kb on + strand, within Psest_0589 at 639.609 kb on + strand, within Psest_0589 at 639.609 kb on + strand, within Psest_0589 at 639.609 kb on + strand, within Psest_0589 at 639.610 kb on - strand, within Psest_0589 at 639.610 kb on - strand, within Psest_0589 at 639.610 kb on - strand, within Psest_0589 at 639.638 kb on + strand, within Psest_0589 at 639.639 kb on - strand, within Psest_0589 at 639.716 kb on - strand, within Psest_0589 at 639.720 kb on - strand, within Psest_0589 at 639.735 kb on + strand, within Psest_0589 at 639.740 kb on - strand, within Psest_0589 at 639.780 kb on + strand at 639.798 kb on - strand at 639.798 kb on - strand at 639.798 kb on - strand at 639.856 kb on + strand at 639.857 kb on - strand at 639.857 kb on - strand at 639.881 kb on + strand at 639.931 kb on - strand at 639.940 kb on + strand at 639.957 kb on - strand at 639.957 kb on - strand at 639.967 kb on + strand at 640.011 kb on + strand at 640.025 kb on + strand at 640.025 kb on + strand at 640.026 kb on - strand at 640.030 kb on + strand at 640.031 kb on - strand at 640.033 kb on - strand at 640.128 kb on - strand at 640.145 kb on - strand at 640.145 kb on - strand at 640.156 kb on + strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.157 kb on - strand at 640.191 kb on + strand at 640.191 kb on + strand at 640.191 kb on + strand at 640.192 kb on - strand at 640.192 kb on - strand at 640.192 kb on - strand at 640.192 kb on - strand at 640.192 kb on - strand at 640.225 kb on + strand at 640.225 kb on + strand at 640.228 kb on + strand at 640.228 kb on + strand at 640.228 kb on + strand at 640.239 kb on + strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.240 kb on - strand at 640.421 kb on + strand at 640.421 kb on + strand at 640.421 kb on + strand at 640.422 kb on - strand at 640.422 kb on - strand at 640.422 kb on - strand at 640.422 kb on - strand at 640.422 kb on - strand at 640.495 kb on + strand at 640.495 kb on + strand at 640.495 kb on + strand at 640.543 kb on + strand, within Psest_0590 at 640.543 kb on + strand, within Psest_0590 at 640.543 kb on + strand, within Psest_0590 at 640.543 kb on + strand, within Psest_0590 at 640.544 kb on - strand, within Psest_0590 at 640.544 kb on - strand, within Psest_0590 at 640.544 kb on - strand, within Psest_0590 at 640.580 kb on + strand, within Psest_0590 at 640.581 kb on - strand, within Psest_0590 at 640.581 kb on - strand, within Psest_0590 at 640.581 kb on - strand, within Psest_0590 at 640.581 kb on - strand, within Psest_0590 at 640.581 kb on - strand, within Psest_0590 at 640.615 kb on + strand, within Psest_0590 at 640.615 kb on + strand, within Psest_0590 at 640.616 kb on - strand, within Psest_0590 at 640.616 kb on - strand, within Psest_0590 at 640.616 kb on - strand, within Psest_0590 at 640.616 kb on - strand, within Psest_0590 at 640.616 kb on - strand, within Psest_0590 at 640.616 kb on - strand, within Psest_0590 at 640.617 kb on + strand, within Psest_0590 at 640.638 kb on + strand, within Psest_0590 at 640.694 kb on + strand, within Psest_0590 at 640.694 kb on + strand, within Psest_0590 at 640.695 kb on - strand, within Psest_0590 at 640.695 kb on - strand, within Psest_0590 at 640.695 kb on - strand, within Psest_0590 at 640.695 kb on - strand, within Psest_0590 at 640.695 kb on - strand, within Psest_0590 at 640.695 kb on - strand, within Psest_0590 at 640.695 kb on - strand, within Psest_0590 at 640.727 kb on + strand, within Psest_0590 at 640.784 kb on - strand, within Psest_0590
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2 mM remove 638,444 - +1.4 638,469 + +0.2 638,470 - +0.1 638,470 - +0.1 638,470 - +1.1 638,470 - -0.1 638,503 + -0.2 638,651 + +0.0 638,681 + +0.4 638,681 + -0.1 638,681 + +0.4 638,682 - +0.7 638,684 + +0.2 638,894 + Psest_0588 0.35 -0.3 638,894 + Psest_0588 0.35 +0.6 638,895 - Psest_0588 0.35 -0.2 638,895 - Psest_0588 0.35 +0.3 638,895 - Psest_0588 0.35 +0.4 638,895 - Psest_0588 0.35 +0.6 639,009 + Psest_0588 0.51 +0.4 639,090 + Psest_0588 0.62 +1.0 639,091 - Psest_0588 0.62 -0.2 639,103 + Psest_0588 0.64 +0.7 639,103 + Psest_0588 0.64 -0.2 639,103 + Psest_0588 0.64 -1.6 639,104 - Psest_0588 0.64 +0.9 639,104 - Psest_0588 0.64 +0.0 639,104 - Psest_0588 0.64 +0.5 639,104 - Psest_0588 0.64 +0.3 639,104 - Psest_0588 0.64 +1.6 639,104 - Psest_0588 0.64 -0.1 639,104 - Psest_0588 0.64 +0.2 639,104 - Psest_0588 0.64 -0.1 639,104 - Psest_0588 0.64 +0.6 639,185 + Psest_0588 0.75 +0.6 639,185 + Psest_0588 0.75 +1.4 639,186 - Psest_0588 0.75 -0.0 639,196 + Psest_0588 0.77 -0.5 639,197 - Psest_0588 0.77 +0.5 639,197 - Psest_0588 0.77 +1.2 639,233 + Psest_0588 0.82 -0.2 639,233 + Psest_0588 0.82 +0.0 639,234 - Psest_0588 0.82 -0.1 639,234 - Psest_0588 0.82 +0.8 639,234 - Psest_0588 0.82 -0.0 639,234 - Psest_0588 0.82 +0.4 639,353 + +0.2 639,354 - +0.5 639,354 - +0.4 639,354 - +0.9 639,354 - -0.4 639,465 - Psest_0589 0.28 -0.0 639,465 - Psest_0589 0.28 +0.2 639,504 + Psest_0589 0.36 -1.7 639,536 + Psest_0589 0.43 -0.5 639,537 - Psest_0589 0.44 -0.9 639,537 - Psest_0589 0.44 -0.4 639,537 - Psest_0589 0.44 -0.0 639,537 - Psest_0589 0.44 -1.0 639,557 - Psest_0589 0.48 +1.0 639,601 + Psest_0589 0.58 +0.3 639,601 + Psest_0589 0.58 -0.7 639,602 - Psest_0589 0.58 -0.2 639,602 - Psest_0589 0.58 +0.4 639,608 - Psest_0589 0.59 -0.3 639,609 + Psest_0589 0.59 -0.1 639,609 + Psest_0589 0.59 -0.2 639,609 + Psest_0589 0.59 +0.1 639,609 + Psest_0589 0.59 +0.4 639,609 + Psest_0589 0.59 +0.1 639,610 - Psest_0589 0.60 -0.2 639,610 - Psest_0589 0.60 -0.3 639,610 - Psest_0589 0.60 +0.1 639,638 + Psest_0589 0.66 +0.8 639,639 - Psest_0589 0.66 +0.8 639,716 - Psest_0589 0.83 +0.3 639,720 - Psest_0589 0.84 +0.0 639,735 + Psest_0589 0.87 +0.4 639,740 - Psest_0589 0.88 -1.5 639,780 + -0.0 639,798 - +0.5 639,798 - -0.7 639,798 - +0.0 639,856 + +0.1 639,857 - +1.6 639,857 - -0.2 639,881 + +0.2 639,931 - +1.2 639,940 + +0.1 639,957 - +1.8 639,957 - -0.4 639,967 + -1.6 640,011 + +0.0 640,025 + +0.2 640,025 + -0.2 640,026 - -1.7 640,030 + -0.7 640,031 - +0.8 640,033 - +1.5 640,128 - +0.1 640,145 - -1.3 640,145 - -2.8 640,156 + +0.3 640,157 - +0.3 640,157 - -0.0 640,157 - -0.7 640,191 + -0.3 640,191 + -0.3 640,191 + -2.0 640,192 - -0.3 640,192 - +0.1 640,192 - -1.1 640,192 - -0.9 640,192 - -0.7 640,225 + -0.7 640,225 + -0.5 640,228 + +0.3 640,228 + -1.1 640,228 + +1.8 640,239 + +1.8 640,240 - +0.0 640,240 - -0.7 640,240 - -0.2 640,240 - +0.5 640,240 - -1.5 640,240 - +0.5 640,240 - +0.5 640,240 - +0.4 640,240 - -0.2 640,240 - -1.3 640,421 + -1.2 640,421 + +0.7 640,421 + -0.0 640,422 - -0.5 640,422 - +0.4 640,422 - -0.6 640,422 - +1.5 640,422 - +0.3 640,495 + -3.5 640,495 + -0.9 640,495 + +0.1 640,543 + Psest_0590 0.12 +0.2 640,543 + Psest_0590 0.12 -0.8 640,543 + Psest_0590 0.12 -0.2 640,543 + Psest_0590 0.12 +0.7 640,544 - Psest_0590 0.12 +0.6 640,544 - Psest_0590 0.12 -1.4 640,544 - Psest_0590 0.12 +0.1 640,580 + Psest_0590 0.15 +0.3 640,581 - Psest_0590 0.15 -1.8 640,581 - Psest_0590 0.15 +0.2 640,581 - Psest_0590 0.15 -0.2 640,581 - Psest_0590 0.15 -0.2 640,581 - Psest_0590 0.15 -1.9 640,615 + Psest_0590 0.17 -0.8 640,615 + Psest_0590 0.17 -0.3 640,616 - Psest_0590 0.17 +0.8 640,616 - Psest_0590 0.17 -0.6 640,616 - Psest_0590 0.17 +2.2 640,616 - Psest_0590 0.17 +0.2 640,616 - Psest_0590 0.17 -1.3 640,616 - Psest_0590 0.17 -0.1 640,617 + Psest_0590 0.17 -0.2 640,638 + Psest_0590 0.18 +0.3 640,694 + Psest_0590 0.21 -0.1 640,694 + Psest_0590 0.21 +0.5 640,695 - Psest_0590 0.21 +0.2 640,695 - Psest_0590 0.21 +0.3 640,695 - Psest_0590 0.21 -0.3 640,695 - Psest_0590 0.21 +0.1 640,695 - Psest_0590 0.21 +0.1 640,695 - Psest_0590 0.21 -0.2 640,695 - Psest_0590 0.21 -0.7 640,727 + Psest_0590 0.23 +0.6 640,784 - Psest_0590 0.27 +0.4
Or see this region's nucleotide sequence