Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_4269

Experiment: Vanillin 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_4268 and Psest_4269 are separated by 261 nucleotidesPsest_4269 and Psest_4270 overlap by 1 nucleotides Psest_4268: Psest_4268 - tripartite ATP-independent periplasmic transporter solute receptor, DctP family, at 4,458,737 to 4,459,732 _4268 Psest_4269: Psest_4269 - C4-dicarboxylate transporter, DctQ subunit (from data), at 4,459,994 to 4,460,620 _4269 Psest_4270: Psest_4270 - TRAP transporter, DctM subunit, at 4,460,620 to 4,461,900 _4270 Position (kb) 4459 4460 4461Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4459.028 kb on + strand, within Psest_4268at 4459.028 kb on + strand, within Psest_4268at 4459.029 kb on - strand, within Psest_4268at 4459.029 kb on - strand, within Psest_4268at 4459.029 kb on - strand, within Psest_4268at 4459.049 kb on + strand, within Psest_4268at 4459.050 kb on - strand, within Psest_4268at 4459.050 kb on - strand, within Psest_4268at 4459.050 kb on - strand, within Psest_4268at 4459.050 kb on - strand, within Psest_4268at 4459.050 kb on - strand, within Psest_4268at 4459.323 kb on - strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.379 kb on + strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.380 kb on - strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.409 kb on + strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.410 kb on - strand, within Psest_4268at 4459.443 kb on - strand, within Psest_4268at 4459.443 kb on - strand, within Psest_4268at 4459.443 kb on - strand, within Psest_4268at 4459.443 kb on - strand, within Psest_4268at 4459.726 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.730 kb on + strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.731 kb on - strandat 4459.806 kb on + strandat 4459.806 kb on + strandat 4459.807 kb on - strandat 4460.039 kb on - strandat 4460.081 kb on + strand, within Psest_4269at 4460.081 kb on + strand, within Psest_4269at 4460.081 kb on + strand, within Psest_4269at 4460.081 kb on + strand, within Psest_4269at 4460.081 kb on + strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.082 kb on - strand, within Psest_4269at 4460.102 kb on + strand, within Psest_4269at 4460.102 kb on + strand, within Psest_4269at 4460.102 kb on + strand, within Psest_4269at 4460.103 kb on - strand, within Psest_4269at 4460.103 kb on - strand, within Psest_4269at 4460.103 kb on - strand, within Psest_4269at 4460.114 kb on + strand, within Psest_4269at 4460.114 kb on + strand, within Psest_4269at 4460.114 kb on + strand, within Psest_4269at 4460.114 kb on + strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.115 kb on - strand, within Psest_4269at 4460.471 kb on - strand, within Psest_4269at 4460.537 kb on - strand, within Psest_4269at 4460.618 kb on + strandat 4460.618 kb on + strandat 4460.619 kb on - strandat 4460.779 kb on + strand, within Psest_4270at 4460.779 kb on + strand, within Psest_4270at 4460.779 kb on + strand, within Psest_4270at 4461.094 kb on + strand, within Psest_4270at 4461.187 kb on + strand, within Psest_4270at 4461.187 kb on + strand, within Psest_4270at 4461.187 kb on + strand, within Psest_4270at 4461.187 kb on + strand, within Psest_4270at 4461.188 kb on - strand, within Psest_4270at 4461.188 kb on - strand, within Psest_4270at 4461.188 kb on - strand, within Psest_4270at 4461.188 kb on - strand, within Psest_4270at 4461.188 kb on - strand, within Psest_4270at 4461.307 kb on - strand, within Psest_4270at 4461.310 kb on + strand, within Psest_4270at 4461.310 kb on + strand, within Psest_4270at 4461.310 kb on + strand, within Psest_4270at 4461.310 kb on + strand, within Psest_4270at 4461.311 kb on - strand, within Psest_4270at 4461.311 kb on - strand, within Psest_4270at 4461.311 kb on - strand, within Psest_4270at 4461.311 kb on - strand, within Psest_4270at 4461.311 kb on - strand, within Psest_4270at 4461.311 kb on - strand, within Psest_4270at 4461.358 kb on + strand, within Psest_4270at 4461.359 kb on - strand, within Psest_4270at 4461.385 kb on + strand, within Psest_4270

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2 mM
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4,459,028 + Psest_4268 0.29 +1.4
4,459,028 + Psest_4268 0.29 -0.6
4,459,029 - Psest_4268 0.29 +1.4
4,459,029 - Psest_4268 0.29 -0.4
4,459,029 - Psest_4268 0.29 +0.8
4,459,049 + Psest_4268 0.31 -0.6
4,459,050 - Psest_4268 0.31 +0.9
4,459,050 - Psest_4268 0.31 +1.0
4,459,050 - Psest_4268 0.31 +0.3
4,459,050 - Psest_4268 0.31 +1.2
4,459,050 - Psest_4268 0.31 +0.3
4,459,323 - Psest_4268 0.59 +2.0
4,459,379 + Psest_4268 0.64 +1.1
4,459,379 + Psest_4268 0.64 +0.5
4,459,379 + Psest_4268 0.64 -0.2
4,459,379 + Psest_4268 0.64 +0.6
4,459,379 + Psest_4268 0.64 +0.7
4,459,379 + Psest_4268 0.64 +2.4
4,459,380 - Psest_4268 0.65 +1.4
4,459,380 - Psest_4268 0.65 -0.2
4,459,380 - Psest_4268 0.65 +1.0
4,459,380 - Psest_4268 0.65 +1.4
4,459,380 - Psest_4268 0.65 -0.2
4,459,380 - Psest_4268 0.65 +1.2
4,459,380 - Psest_4268 0.65 +0.9
4,459,409 + Psest_4268 0.67 +1.1
4,459,409 + Psest_4268 0.67 +0.4
4,459,409 + Psest_4268 0.67 +2.0
4,459,409 + Psest_4268 0.67 +1.7
4,459,409 + Psest_4268 0.67 +1.0
4,459,409 + Psest_4268 0.67 -0.0
4,459,409 + Psest_4268 0.67 +1.1
4,459,409 + Psest_4268 0.67 +2.0
4,459,410 - Psest_4268 0.68 +0.5
4,459,410 - Psest_4268 0.68 +1.4
4,459,410 - Psest_4268 0.68 +0.5
4,459,410 - Psest_4268 0.68 +1.4
4,459,410 - Psest_4268 0.68 +1.9
4,459,410 - Psest_4268 0.68 +1.4
4,459,410 - Psest_4268 0.68 +0.5
4,459,410 - Psest_4268 0.68 +1.2
4,459,410 - Psest_4268 0.68 +2.1
4,459,410 - Psest_4268 0.68 -0.2
4,459,443 - Psest_4268 0.71 -0.2
4,459,443 - Psest_4268 0.71 -1.4
4,459,443 - Psest_4268 0.71 +0.7
4,459,443 - Psest_4268 0.71 +1.0
4,459,726 + -0.9
4,459,730 + +1.4
4,459,730 + +0.7
4,459,730 + +0.7
4,459,730 + +0.1
4,459,730 + -0.8
4,459,730 + -1.2
4,459,730 + +2.1
4,459,731 - +0.2
4,459,731 - +1.4
4,459,731 - +1.1
4,459,731 - +1.4
4,459,731 - +0.8
4,459,731 - +0.5
4,459,731 - +1.4
4,459,731 - +0.3
4,459,731 - +2.4
4,459,731 - -0.2
4,459,731 - +0.9
4,459,731 - +3.7
4,459,806 + +0.1
4,459,806 + +2.1
4,459,807 - +0.4
4,460,039 - +1.4
4,460,081 + Psest_4269 0.14 +1.4
4,460,081 + Psest_4269 0.14 -0.2
4,460,081 + Psest_4269 0.14 +1.1
4,460,081 + Psest_4269 0.14 +1.8
4,460,081 + Psest_4269 0.14 +2.3
4,460,082 - Psest_4269 0.14 +1.1
4,460,082 - Psest_4269 0.14 -0.3
4,460,082 - Psest_4269 0.14 +0.1
4,460,082 - Psest_4269 0.14 +1.5
4,460,082 - Psest_4269 0.14 -0.9
4,460,082 - Psest_4269 0.14 +1.4
4,460,102 + Psest_4269 0.17 +1.4
4,460,102 + Psest_4269 0.17 +2.4
4,460,102 + Psest_4269 0.17 +0.4
4,460,103 - Psest_4269 0.17 -0.2
4,460,103 - Psest_4269 0.17 +1.0
4,460,103 - Psest_4269 0.17 +0.2
4,460,114 + Psest_4269 0.19 +2.0
4,460,114 + Psest_4269 0.19 +2.4
4,460,114 + Psest_4269 0.19 +0.4
4,460,114 + Psest_4269 0.19 +1.0
4,460,115 - Psest_4269 0.19 +0.1
4,460,115 - Psest_4269 0.19 +0.3
4,460,115 - Psest_4269 0.19 +0.1
4,460,115 - Psest_4269 0.19 -1.9
4,460,115 - Psest_4269 0.19 +0.9
4,460,115 - Psest_4269 0.19 +1.4
4,460,115 - Psest_4269 0.19 -0.3
4,460,115 - Psest_4269 0.19 +0.5
4,460,115 - Psest_4269 0.19 -0.2
4,460,115 - Psest_4269 0.19 +0.8
4,460,471 - Psest_4269 0.76 +3.4
4,460,537 - Psest_4269 0.87 +2.4
4,460,618 + +1.8
4,460,618 + +2.4
4,460,619 - +1.0
4,460,779 + Psest_4270 0.12 -0.0
4,460,779 + Psest_4270 0.12 +0.5
4,460,779 + Psest_4270 0.12 +0.8
4,461,094 + Psest_4270 0.37 +0.8
4,461,187 + Psest_4270 0.44 +0.8
4,461,187 + Psest_4270 0.44 +0.7
4,461,187 + Psest_4270 0.44 +0.8
4,461,187 + Psest_4270 0.44 +0.8
4,461,188 - Psest_4270 0.44 +0.9
4,461,188 - Psest_4270 0.44 +3.0
4,461,188 - Psest_4270 0.44 -0.2
4,461,188 - Psest_4270 0.44 +1.0
4,461,188 - Psest_4270 0.44 +0.1
4,461,307 - Psest_4270 0.54 +1.0
4,461,310 + Psest_4270 0.54 +2.4
4,461,310 + Psest_4270 0.54 +0.6
4,461,310 + Psest_4270 0.54 +0.4
4,461,310 + Psest_4270 0.54 +0.7
4,461,311 - Psest_4270 0.54 +0.1
4,461,311 - Psest_4270 0.54 +0.2
4,461,311 - Psest_4270 0.54 +0.0
4,461,311 - Psest_4270 0.54 +0.6
4,461,311 - Psest_4270 0.54 +1.8
4,461,311 - Psest_4270 0.54 +1.7
4,461,358 + Psest_4270 0.58 +0.9
4,461,359 - Psest_4270 0.58 -0.6
4,461,385 + Psest_4270 0.60 +0.5

Or see this region's nucleotide sequence