Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0392

Experiment: Vanillin 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0390 and Psest_0391 are separated by 436 nucleotidesPsest_0391 and Psest_0392 are separated by 195 nucleotidesPsest_0392 and Psest_0393 are separated by 1 nucleotidesPsest_0393 and Psest_0394 overlap by 4 nucleotides Psest_0390: Psest_0390 - Short-chain dehydrogenases of various substrate specificities, at 417,981 to 418,973 _0390 Psest_0391: Psest_0391 - Uncharacterized homolog of Blt101, at 419,410 to 419,568 _0391 Psest_0392: Psest_0392 - Signal transduction histidine kinase, at 419,764 to 423,273 _0392 Psest_0393: Psest_0393 - Methylase of chemotaxis methyl-accepting proteins, at 423,275 to 424,093 _0393 Psest_0394: Psest_0394 - Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain, at 424,090 to 424,692 _0394 Position (kb) 419 420 421 422 423 424Strain fitness (log2 ratio) -2 -1 0 1 2 3at 418.973 kb on + strandat 418.974 kb on - strandat 419.219 kb on + strandat 419.220 kb on - strandat 419.220 kb on - strandat 419.220 kb on - strandat 419.220 kb on - strandat 419.220 kb on - strandat 419.369 kb on + strandat 419.653 kb on - strandat 419.653 kb on - strandat 419.653 kb on - strandat 419.655 kb on + strandat 419.656 kb on - strandat 419.685 kb on - strandat 419.804 kb on + strandat 419.814 kb on + strandat 419.875 kb on + strandat 419.875 kb on + strandat 419.875 kb on + strandat 419.876 kb on - strandat 419.876 kb on - strandat 419.876 kb on - strandat 419.878 kb on + strandat 419.878 kb on + strandat 419.878 kb on + strandat 419.878 kb on + strandat 419.878 kb on + strandat 419.878 kb on + strandat 419.879 kb on - strandat 420.070 kb on + strandat 420.193 kb on + strand, within Psest_0392at 420.193 kb on + strand, within Psest_0392at 420.193 kb on + strand, within Psest_0392at 420.193 kb on + strand, within Psest_0392at 420.294 kb on + strand, within Psest_0392at 420.295 kb on - strand, within Psest_0392at 420.295 kb on - strand, within Psest_0392at 420.370 kb on + strand, within Psest_0392at 420.370 kb on + strand, within Psest_0392at 420.370 kb on + strand, within Psest_0392at 420.370 kb on + strand, within Psest_0392at 420.371 kb on - strand, within Psest_0392at 420.371 kb on - strand, within Psest_0392at 420.371 kb on - strand, within Psest_0392at 420.409 kb on + strand, within Psest_0392at 420.409 kb on + strand, within Psest_0392at 420.409 kb on + strand, within Psest_0392at 420.409 kb on + strand, within Psest_0392at 420.410 kb on - strand, within Psest_0392at 420.410 kb on - strand, within Psest_0392at 420.410 kb on - strand, within Psest_0392at 420.410 kb on - strand, within Psest_0392at 420.563 kb on - strand, within Psest_0392at 420.589 kb on + strand, within Psest_0392at 420.589 kb on + strand, within Psest_0392at 420.589 kb on + strand, within Psest_0392at 420.589 kb on + strand, within Psest_0392at 420.589 kb on + strand, within Psest_0392at 420.589 kb on + strand, within Psest_0392at 420.589 kb on + strand, within Psest_0392at 420.590 kb on - strand, within Psest_0392at 420.590 kb on - strand, within Psest_0392at 420.590 kb on - strand, within Psest_0392at 420.590 kb on - strand, within Psest_0392at 420.590 kb on - strand, within Psest_0392at 420.629 kb on - strand, within Psest_0392at 420.635 kb on - strand, within Psest_0392at 420.635 kb on - strand, within Psest_0392at 420.746 kb on - strand, within Psest_0392at 421.234 kb on + strand, within Psest_0392at 421.276 kb on - strand, within Psest_0392at 421.745 kb on + strand, within Psest_0392at 421.915 kb on + strand, within Psest_0392at 421.915 kb on + strand, within Psest_0392at 421.915 kb on + strand, within Psest_0392at 421.916 kb on - strand, within Psest_0392at 421.916 kb on - strand, within Psest_0392at 421.916 kb on - strand, within Psest_0392at 421.916 kb on - strand, within Psest_0392at 422.165 kb on - strand, within Psest_0392at 422.165 kb on - strand, within Psest_0392at 422.165 kb on - strand, within Psest_0392at 422.165 kb on - strand, within Psest_0392at 422.218 kb on + strand, within Psest_0392at 422.218 kb on + strand, within Psest_0392at 422.218 kb on + strand, within Psest_0392at 422.219 kb on - strand, within Psest_0392at 422.219 kb on - strand, within Psest_0392at 422.219 kb on - strand, within Psest_0392at 422.695 kb on + strand, within Psest_0392at 422.695 kb on + strand, within Psest_0392at 422.696 kb on - strand, within Psest_0392at 422.743 kb on + strand, within Psest_0392at 422.743 kb on + strand, within Psest_0392at 422.743 kb on + strand, within Psest_0392at 422.744 kb on - strand, within Psest_0392at 422.832 kb on + strand, within Psest_0392at 423.196 kb on + strandat 423.197 kb on - strandat 423.197 kb on - strandat 423.197 kb on - strandat 423.326 kb on + strandat 423.326 kb on + strandat 423.326 kb on + strandat 423.326 kb on + strandat 423.326 kb on + strandat 423.327 kb on - strandat 423.327 kb on - strandat 423.327 kb on - strandat 423.327 kb on - strandat 423.327 kb on - strandat 423.327 kb on - strandat 423.327 kb on - strandat 423.335 kb on + strandat 423.335 kb on + strandat 423.335 kb on + strandat 423.335 kb on + strandat 423.335 kb on + strandat 423.335 kb on + strandat 423.336 kb on - strandat 423.336 kb on - strandat 423.336 kb on - strandat 423.336 kb on - strandat 423.336 kb on - strandat 423.341 kb on + strandat 423.342 kb on - strandat 423.356 kb on + strandat 423.357 kb on - strand, within Psest_0393at 423.357 kb on - strand, within Psest_0393at 423.522 kb on - strand, within Psest_0393at 423.522 kb on - strand, within Psest_0393at 423.522 kb on - strand, within Psest_0393at 423.547 kb on - strand, within Psest_0393at 423.547 kb on - strand, within Psest_0393at 423.547 kb on - strand, within Psest_0393at 423.547 kb on - strand, within Psest_0393at 423.671 kb on + strand, within Psest_0393at 423.672 kb on - strand, within Psest_0393at 423.672 kb on - strand, within Psest_0393at 423.672 kb on - strand, within Psest_0393at 423.672 kb on - strand, within Psest_0393at 423.672 kb on - strand, within Psest_0393at 423.672 kb on - strand, within Psest_0393at 423.759 kb on - strand, within Psest_0393at 423.798 kb on - strand, within Psest_0393at 423.798 kb on - strand, within Psest_0393at 423.798 kb on - strand, within Psest_0393at 423.866 kb on - strand, within Psest_0393at 423.886 kb on - strand, within Psest_0393at 423.886 kb on - strand, within Psest_0393at 423.886 kb on - strand, within Psest_0393at 423.929 kb on + strand, within Psest_0393at 423.929 kb on + strand, within Psest_0393at 424.050 kb on - strandat 424.050 kb on - strandat 424.089 kb on + strandat 424.089 kb on + strandat 424.090 kb on - strandat 424.090 kb on - strandat 424.090 kb on - strandat 424.090 kb on - strandat 424.090 kb on - strandat 424.247 kb on + strand, within Psest_0394at 424.247 kb on + strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394at 424.248 kb on - strand, within Psest_0394

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2 mM
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418,973 + -0.8
418,974 - -0.5
419,219 + +0.2
419,220 - +2.2
419,220 - +0.5
419,220 - -0.7
419,220 - -1.6
419,220 - +1.5
419,369 + -0.2
419,653 - +0.5
419,653 - +1.2
419,653 - +0.1
419,655 + -0.8
419,656 - +0.5
419,685 - -0.1
419,804 + +1.2
419,814 + -0.6
419,875 + -0.3
419,875 + -1.0
419,875 + +3.5
419,876 - +1.2
419,876 - +0.0
419,876 - -0.1
419,878 + +1.2
419,878 + +0.5
419,878 + +0.3
419,878 + +0.4
419,878 + +0.8
419,878 + -1.0
419,879 - +1.2
420,070 + -1.8
420,193 + Psest_0392 0.12 +1.5
420,193 + Psest_0392 0.12 -1.4
420,193 + Psest_0392 0.12 +1.8
420,193 + Psest_0392 0.12 +0.7
420,294 + Psest_0392 0.15 -0.4
420,295 - Psest_0392 0.15 -1.1
420,295 - Psest_0392 0.15 -0.5
420,370 + Psest_0392 0.17 -0.0
420,370 + Psest_0392 0.17 -1.0
420,370 + Psest_0392 0.17 +0.2
420,370 + Psest_0392 0.17 -0.6
420,371 - Psest_0392 0.17 +0.8
420,371 - Psest_0392 0.17 -0.4
420,371 - Psest_0392 0.17 +0.4
420,409 + Psest_0392 0.18 +0.5
420,409 + Psest_0392 0.18 -0.1
420,409 + Psest_0392 0.18 -0.4
420,409 + Psest_0392 0.18 -0.6
420,410 - Psest_0392 0.18 -0.2
420,410 - Psest_0392 0.18 -0.2
420,410 - Psest_0392 0.18 +1.2
420,410 - Psest_0392 0.18 -0.1
420,563 - Psest_0392 0.23 +0.0
420,589 + Psest_0392 0.24 +0.1
420,589 + Psest_0392 0.24 +0.6
420,589 + Psest_0392 0.24 +0.0
420,589 + Psest_0392 0.24 +0.5
420,589 + Psest_0392 0.24 -2.1
420,589 + Psest_0392 0.24 +1.7
420,589 + Psest_0392 0.24 -1.6
420,590 - Psest_0392 0.24 +2.0
420,590 - Psest_0392 0.24 -0.6
420,590 - Psest_0392 0.24 -0.2
420,590 - Psest_0392 0.24 +0.6
420,590 - Psest_0392 0.24 +0.2
420,629 - Psest_0392 0.25 +1.1
420,635 - Psest_0392 0.25 -0.5
420,635 - Psest_0392 0.25 +0.8
420,746 - Psest_0392 0.28 -1.4
421,234 + Psest_0392 0.42 +0.1
421,276 - Psest_0392 0.43 +0.2
421,745 + Psest_0392 0.56 +1.5
421,915 + Psest_0392 0.61 +1.2
421,915 + Psest_0392 0.61 +2.2
421,915 + Psest_0392 0.61 +0.1
421,916 - Psest_0392 0.61 -2.3
421,916 - Psest_0392 0.61 -1.6
421,916 - Psest_0392 0.61 -2.0
421,916 - Psest_0392 0.61 -2.1
422,165 - Psest_0392 0.68 -0.4
422,165 - Psest_0392 0.68 +2.2
422,165 - Psest_0392 0.68 -0.4
422,165 - Psest_0392 0.68 -0.4
422,218 + Psest_0392 0.70 +0.9
422,218 + Psest_0392 0.70 +0.2
422,218 + Psest_0392 0.70 -1.1
422,219 - Psest_0392 0.70 +1.2
422,219 - Psest_0392 0.70 +0.2
422,219 - Psest_0392 0.70 +1.2
422,695 + Psest_0392 0.84 +0.4
422,695 + Psest_0392 0.84 +0.8
422,696 - Psest_0392 0.84 -0.4
422,743 + Psest_0392 0.85 +0.7
422,743 + Psest_0392 0.85 +1.3
422,743 + Psest_0392 0.85 +0.7
422,744 - Psest_0392 0.85 +1.8
422,832 + Psest_0392 0.87 +1.4
423,196 + -0.1
423,197 - +1.0
423,197 - -0.1
423,197 - -0.4
423,326 + +2.5
423,326 + +1.9
423,326 + +1.4
423,326 + +0.7
423,326 + +1.7
423,327 - +0.3
423,327 - +1.2
423,327 - +1.2
423,327 - +0.7
423,327 - +1.4
423,327 - +0.8
423,327 - +1.7
423,335 + +2.1
423,335 + +1.1
423,335 + +2.7
423,335 + +1.7
423,335 + +0.5
423,335 + +0.6
423,336 - +0.4
423,336 - +1.0
423,336 - +0.6
423,336 - +1.2
423,336 - -0.2
423,341 + +2.1
423,342 - +1.2
423,356 + +1.7
423,357 - Psest_0393 0.10 +1.0
423,357 - Psest_0393 0.10 +3.5
423,522 - Psest_0393 0.30 +1.8
423,522 - Psest_0393 0.30 +2.0
423,522 - Psest_0393 0.30 +1.2
423,547 - Psest_0393 0.33 +0.5
423,547 - Psest_0393 0.33 +1.4
423,547 - Psest_0393 0.33 +1.5
423,547 - Psest_0393 0.33 +1.8
423,671 + Psest_0393 0.48 +2.2
423,672 - Psest_0393 0.48 +1.9
423,672 - Psest_0393 0.48 -0.0
423,672 - Psest_0393 0.48 +1.0
423,672 - Psest_0393 0.48 +2.1
423,672 - Psest_0393 0.48 +1.3
423,672 - Psest_0393 0.48 -0.0
423,759 - Psest_0393 0.59 +0.9
423,798 - Psest_0393 0.64 +1.2
423,798 - Psest_0393 0.64 +0.2
423,798 - Psest_0393 0.64 +0.1
423,866 - Psest_0393 0.72 +2.0
423,886 - Psest_0393 0.75 +2.2
423,886 - Psest_0393 0.75 +1.0
423,886 - Psest_0393 0.75 +1.6
423,929 + Psest_0393 0.80 +2.2
423,929 + Psest_0393 0.80 +0.2
424,050 - +2.8
424,050 - +2.0
424,089 + -1.0
424,089 + +0.4
424,090 - +1.9
424,090 - -0.1
424,090 - -0.6
424,090 - -1.8
424,090 - +0.6
424,247 + Psest_0394 0.26 -0.8
424,247 + Psest_0394 0.26 +0.2
424,248 - Psest_0394 0.26 +0.9
424,248 - Psest_0394 0.26 -0.3
424,248 - Psest_0394 0.26 +0.3
424,248 - Psest_0394 0.26 +0.8
424,248 - Psest_0394 0.26 +0.4
424,248 - Psest_0394 0.26 +0.8
424,248 - Psest_0394 0.26 -0.3
424,248 - Psest_0394 0.26 +0.1

Or see this region's nucleotide sequence