Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0384

Experiment: Vanillin 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0382 and Psest_0383 are separated by 2 nucleotidesPsest_0383 and Psest_0384 are separated by 108 nucleotidesPsest_0384 and Psest_0385 are separated by 313 nucleotidesPsest_0385 and Psest_0386 are separated by 0 nucleotides Psest_0382: Psest_0382 - Uncharacterized iron-regulated membrane protein, at 411,287 to 412,813 _0382 Psest_0383: Psest_0383 - Protein of unknown function (DUF3325)., at 412,816 to 413,139 _0383 Psest_0384: Psest_0384 - outer membrane porin, OprD family., at 413,248 to 414,519 _0384 Psest_0385: Psest_0385 - Conserved secreted protein, at 414,833 to 415,336 _0385 Psest_0386: Psest_0386 - Membrane protease subunits, stomatin/prohibitin homologs, at 415,337 to 416,095 _0386 Position (kb) 413 414 415Strain fitness (log2 ratio) -2 -1 0 1 2at 412.292 kb on + strand, within Psest_0382at 412.292 kb on + strand, within Psest_0382at 412.293 kb on - strand, within Psest_0382at 412.293 kb on - strand, within Psest_0382at 413.015 kb on + strand, within Psest_0383at 413.138 kb on - strandat 413.250 kb on - strandat 413.267 kb on + strandat 413.310 kb on - strandat 413.377 kb on - strand, within Psest_0384at 413.377 kb on - strand, within Psest_0384at 413.378 kb on + strand, within Psest_0384at 413.379 kb on - strand, within Psest_0384at 413.454 kb on - strand, within Psest_0384at 413.501 kb on + strand, within Psest_0384at 413.501 kb on + strand, within Psest_0384at 413.501 kb on + strand, within Psest_0384at 413.501 kb on + strand, within Psest_0384at 413.501 kb on + strand, within Psest_0384at 413.502 kb on - strand, within Psest_0384at 413.502 kb on - strand, within Psest_0384at 413.502 kb on - strand, within Psest_0384at 413.543 kb on + strand, within Psest_0384at 413.543 kb on + strand, within Psest_0384at 413.639 kb on + strand, within Psest_0384at 413.639 kb on + strand, within Psest_0384at 413.640 kb on - strand, within Psest_0384at 413.681 kb on + strand, within Psest_0384at 413.681 kb on + strand, within Psest_0384at 413.681 kb on + strand, within Psest_0384at 413.681 kb on + strand, within Psest_0384at 413.682 kb on - strand, within Psest_0384at 413.682 kb on - strand, within Psest_0384at 413.682 kb on - strand, within Psest_0384at 413.738 kb on + strand, within Psest_0384at 413.738 kb on + strand, within Psest_0384at 413.739 kb on - strand, within Psest_0384at 413.801 kb on + strand, within Psest_0384at 413.801 kb on + strand, within Psest_0384at 413.801 kb on + strand, within Psest_0384at 413.801 kb on + strand, within Psest_0384at 413.801 kb on + strand, within Psest_0384at 413.802 kb on - strand, within Psest_0384at 413.802 kb on - strand, within Psest_0384at 413.802 kb on - strand, within Psest_0384at 413.802 kb on - strand, within Psest_0384at 413.802 kb on - strand, within Psest_0384at 413.802 kb on - strand, within Psest_0384at 413.813 kb on + strand, within Psest_0384at 413.813 kb on + strand, within Psest_0384at 413.813 kb on + strand, within Psest_0384at 413.813 kb on + strand, within Psest_0384at 413.813 kb on + strand, within Psest_0384at 413.814 kb on - strand, within Psest_0384at 413.814 kb on - strand, within Psest_0384at 413.814 kb on - strand, within Psest_0384at 413.814 kb on - strand, within Psest_0384at 413.814 kb on - strand, within Psest_0384at 413.814 kb on - strand, within Psest_0384at 413.814 kb on - strand, within Psest_0384at 413.814 kb on - strand, within Psest_0384at 413.814 kb on - strand, within Psest_0384at 413.814 kb on - strand, within Psest_0384at 413.814 kb on - strand, within Psest_0384at 413.870 kb on + strand, within Psest_0384at 414.190 kb on + strand, within Psest_0384at 414.212 kb on + strand, within Psest_0384at 414.212 kb on + strand, within Psest_0384at 414.212 kb on + strand, within Psest_0384at 414.213 kb on - strand, within Psest_0384at 414.290 kb on + strand, within Psest_0384at 414.290 kb on + strand, within Psest_0384at 414.380 kb on + strand, within Psest_0384at 414.380 kb on + strand, within Psest_0384at 414.381 kb on - strand, within Psest_0384at 414.381 kb on - strand, within Psest_0384at 414.381 kb on - strand, within Psest_0384at 414.381 kb on - strand, within Psest_0384at 414.381 kb on - strand, within Psest_0384at 414.520 kb on + strandat 414.690 kb on + strandat 414.691 kb on - strandat 414.719 kb on - strandat 414.719 kb on - strandat 414.771 kb on - strandat 414.847 kb on - strandat 415.128 kb on + strand, within Psest_0385at 415.129 kb on - strand, within Psest_0385at 415.129 kb on - strand, within Psest_0385at 415.328 kb on + strandat 415.328 kb on + strandat 415.328 kb on + strandat 415.328 kb on + strandat 415.328 kb on + strandat 415.328 kb on + strandat 415.329 kb on - strandat 415.329 kb on - strandat 415.329 kb on - strandat 415.329 kb on - strandat 415.329 kb on - strandat 415.329 kb on - strandat 415.329 kb on - strandat 415.329 kb on - strandat 415.329 kb on - strandat 415.329 kb on - strandat 415.329 kb on - strandat 415.329 kb on - strandat 415.443 kb on + strand, within Psest_0386at 415.443 kb on + strand, within Psest_0386at 415.444 kb on - strand, within Psest_0386

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2 mM
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412,292 + Psest_0382 0.66 +1.2
412,292 + Psest_0382 0.66 +1.2
412,293 - Psest_0382 0.66 +0.2
412,293 - Psest_0382 0.66 -0.9
413,015 + Psest_0383 0.61 -0.8
413,138 - +1.2
413,250 - -0.4
413,267 + -1.1
413,310 - -2.0
413,377 - Psest_0384 0.10 -1.6
413,377 - Psest_0384 0.10 +1.6
413,378 + Psest_0384 0.10 +0.6
413,379 - Psest_0384 0.10 -0.5
413,454 - Psest_0384 0.16 +1.2
413,501 + Psest_0384 0.20 +0.4
413,501 + Psest_0384 0.20 +1.2
413,501 + Psest_0384 0.20 -1.2
413,501 + Psest_0384 0.20 +0.9
413,501 + Psest_0384 0.20 -0.4
413,502 - Psest_0384 0.20 -0.8
413,502 - Psest_0384 0.20 -0.2
413,502 - Psest_0384 0.20 -0.4
413,543 + Psest_0384 0.23 -0.6
413,543 + Psest_0384 0.23 +1.2
413,639 + Psest_0384 0.31 +1.2
413,639 + Psest_0384 0.31 -0.2
413,640 - Psest_0384 0.31 -1.2
413,681 + Psest_0384 0.34 +0.6
413,681 + Psest_0384 0.34 -1.8
413,681 + Psest_0384 0.34 -0.1
413,681 + Psest_0384 0.34 +0.5
413,682 - Psest_0384 0.34 -1.1
413,682 - Psest_0384 0.34 -1.6
413,682 - Psest_0384 0.34 -1.4
413,738 + Psest_0384 0.39 +1.6
413,738 + Psest_0384 0.39 +0.4
413,739 - Psest_0384 0.39 -1.8
413,801 + Psest_0384 0.43 -1.2
413,801 + Psest_0384 0.43 -0.2
413,801 + Psest_0384 0.43 -1.9
413,801 + Psest_0384 0.43 +0.2
413,801 + Psest_0384 0.43 +0.0
413,802 - Psest_0384 0.44 -0.4
413,802 - Psest_0384 0.44 -0.2
413,802 - Psest_0384 0.44 -0.1
413,802 - Psest_0384 0.44 -0.2
413,802 - Psest_0384 0.44 +0.6
413,802 - Psest_0384 0.44 -0.2
413,813 + Psest_0384 0.44 -2.1
413,813 + Psest_0384 0.44 +0.7
413,813 + Psest_0384 0.44 -0.1
413,813 + Psest_0384 0.44 +0.7
413,813 + Psest_0384 0.44 -0.7
413,814 - Psest_0384 0.44 +0.6
413,814 - Psest_0384 0.44 +0.6
413,814 - Psest_0384 0.44 -0.2
413,814 - Psest_0384 0.44 +1.2
413,814 - Psest_0384 0.44 -0.4
413,814 - Psest_0384 0.44 +0.1
413,814 - Psest_0384 0.44 -1.6
413,814 - Psest_0384 0.44 +1.2
413,814 - Psest_0384 0.44 -1.1
413,814 - Psest_0384 0.44 +0.6
413,814 - Psest_0384 0.44 -0.4
413,870 + Psest_0384 0.49 -1.4
414,190 + Psest_0384 0.74 +2.2
414,212 + Psest_0384 0.76 -1.5
414,212 + Psest_0384 0.76 -0.4
414,212 + Psest_0384 0.76 +1.2
414,213 - Psest_0384 0.76 +0.1
414,290 + Psest_0384 0.82 +1.2
414,290 + Psest_0384 0.82 +0.9
414,380 + Psest_0384 0.89 -0.8
414,380 + Psest_0384 0.89 +1.8
414,381 - Psest_0384 0.89 +0.2
414,381 - Psest_0384 0.89 +0.6
414,381 - Psest_0384 0.89 +0.1
414,381 - Psest_0384 0.89 +1.2
414,381 - Psest_0384 0.89 -1.1
414,520 + +1.2
414,690 + +1.0
414,691 - +2.5
414,719 - +0.2
414,719 - -0.0
414,771 - -1.2
414,847 - +1.2
415,128 + Psest_0385 0.59 -1.1
415,129 - Psest_0385 0.59 +1.5
415,129 - Psest_0385 0.59 +1.2
415,328 + -0.1
415,328 + -0.3
415,328 + -1.4
415,328 + +2.2
415,328 + +0.5
415,328 + -0.3
415,329 - -0.3
415,329 - +0.2
415,329 - +0.8
415,329 - +1.2
415,329 - +0.6
415,329 - -0.4
415,329 - -0.7
415,329 - +0.2
415,329 - +0.2
415,329 - +0.2
415,329 - +1.2
415,329 - -0.4
415,443 + Psest_0386 0.14 +0.5
415,443 + Psest_0386 0.14 +0.6
415,444 - Psest_0386 0.14 +0.1

Or see this region's nucleotide sequence