Experiment: D,L-Lactate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HP15_3012 and HP15_3013 are separated by 138 nucleotides HP15_3013 and HP15_3014 are separated by 193 nucleotides HP15_3014 and HP15_3015 overlap by 1 nucleotides
HP15_3012: HP15_3012 - imidazoleglycerol-phosphate dehydratase, at 3,156,526 to 3,157,119
_3012
HP15_3013: HP15_3013 - conserved hypothetical protein, at 3,157,258 to 3,157,719
_3013
HP15_3014: HP15_3014 - AsmA family protein, at 3,157,913 to 3,160,078
_3014
HP15_3015: HP15_3015 - A/G-specific adenine glycosylase-like protein, at 3,160,078 to 3,161,145
_3015
Position (kb)
3157
3158
3159
3160
3161 Strain fitness (log2 ratio)
-1
0
1 at 3157.365 kb on - strand, within HP15_3013 at 3157.376 kb on - strand, within HP15_3013 at 3157.445 kb on + strand, within HP15_3013 at 3157.521 kb on - strand, within HP15_3013 at 3157.690 kb on + strand at 3157.722 kb on - strand at 3157.745 kb on - strand at 3157.834 kb on + strand at 3157.842 kb on - strand at 3157.850 kb on + strand at 3157.952 kb on - strand at 3158.046 kb on + strand at 3158.097 kb on + strand at 3158.111 kb on - strand at 3158.167 kb on + strand, within HP15_3014 at 3158.205 kb on + strand, within HP15_3014 at 3158.221 kb on - strand, within HP15_3014 at 3158.428 kb on - strand, within HP15_3014 at 3158.727 kb on + strand, within HP15_3014 at 3158.789 kb on - strand, within HP15_3014 at 3158.808 kb on + strand, within HP15_3014 at 3158.808 kb on + strand, within HP15_3014 at 3158.816 kb on - strand, within HP15_3014 at 3158.957 kb on + strand, within HP15_3014 at 3159.049 kb on + strand, within HP15_3014 at 3159.064 kb on + strand, within HP15_3014 at 3159.072 kb on - strand, within HP15_3014 at 3159.198 kb on + strand, within HP15_3014 at 3159.206 kb on - strand, within HP15_3014 at 3159.206 kb on - strand, within HP15_3014 at 3159.235 kb on + strand, within HP15_3014 at 3159.283 kb on + strand, within HP15_3014 at 3159.291 kb on - strand, within HP15_3014 at 3159.530 kb on + strand, within HP15_3014 at 3159.539 kb on - strand, within HP15_3014 at 3159.561 kb on + strand, within HP15_3014 at 3159.568 kb on + strand, within HP15_3014 at 3159.639 kb on + strand, within HP15_3014 at 3159.639 kb on + strand, within HP15_3014 at 3159.647 kb on - strand, within HP15_3014 at 3159.647 kb on - strand, within HP15_3014 at 3159.721 kb on + strand, within HP15_3014 at 3159.947 kb on - strand at 3159.985 kb on - strand at 3159.986 kb on + strand at 3159.994 kb on - strand at 3159.994 kb on - strand at 3160.057 kb on + strand at 3160.077 kb on - strand at 3160.259 kb on + strand, within HP15_3015 at 3160.312 kb on - strand, within HP15_3015 at 3160.431 kb on + strand, within HP15_3015 at 3160.460 kb on - strand, within HP15_3015 at 3160.494 kb on + strand, within HP15_3015 at 3160.597 kb on - strand, within HP15_3015 at 3160.610 kb on + strand, within HP15_3015 at 3160.618 kb on - strand, within HP15_3015 at 3160.711 kb on - strand, within HP15_3015 at 3160.728 kb on - strand, within HP15_3015 at 3160.730 kb on + strand, within HP15_3015 at 3160.883 kb on + strand, within HP15_3015 at 3160.997 kb on - strand, within HP15_3015 at 3160.997 kb on - strand, within HP15_3015
Per-strain Table
Position Strand Gene LocusTag Fraction D,L-Lactate (C) remove 3,157,365 - HP15_3013 0.23 -0.2 3,157,376 - HP15_3013 0.26 +0.6 3,157,445 + HP15_3013 0.40 -0.2 3,157,521 - HP15_3013 0.57 +0.7 3,157,690 + -0.4 3,157,722 - -0.7 3,157,745 - -0.7 3,157,834 + -0.3 3,157,842 - -0.0 3,157,850 + +0.2 3,157,952 - +0.8 3,158,046 + -0.0 3,158,097 + +0.4 3,158,111 - +0.2 3,158,167 + HP15_3014 0.12 -0.1 3,158,205 + HP15_3014 0.13 -0.2 3,158,221 - HP15_3014 0.14 -0.8 3,158,428 - HP15_3014 0.24 +0.9 3,158,727 + HP15_3014 0.38 +0.0 3,158,789 - HP15_3014 0.40 +0.3 3,158,808 + HP15_3014 0.41 +0.1 3,158,808 + HP15_3014 0.41 +0.5 3,158,816 - HP15_3014 0.42 +0.1 3,158,957 + HP15_3014 0.48 +0.0 3,159,049 + HP15_3014 0.52 +0.1 3,159,064 + HP15_3014 0.53 +0.1 3,159,072 - HP15_3014 0.54 -0.2 3,159,198 + HP15_3014 0.59 -0.6 3,159,206 - HP15_3014 0.60 -0.3 3,159,206 - HP15_3014 0.60 -0.2 3,159,235 + HP15_3014 0.61 -0.1 3,159,283 + HP15_3014 0.63 -0.1 3,159,291 - HP15_3014 0.64 -0.3 3,159,530 + HP15_3014 0.75 +0.1 3,159,539 - HP15_3014 0.75 -0.2 3,159,561 + HP15_3014 0.76 -0.2 3,159,568 + HP15_3014 0.76 -0.5 3,159,639 + HP15_3014 0.80 +0.4 3,159,639 + HP15_3014 0.80 -0.1 3,159,647 - HP15_3014 0.80 +0.4 3,159,647 - HP15_3014 0.80 -0.3 3,159,721 + HP15_3014 0.83 +0.1 3,159,947 - -0.1 3,159,985 - +0.3 3,159,986 + -0.1 3,159,994 - +0.1 3,159,994 - +0.5 3,160,057 + +0.1 3,160,077 - -0.3 3,160,259 + HP15_3015 0.17 -0.1 3,160,312 - HP15_3015 0.22 -0.1 3,160,431 + HP15_3015 0.33 +0.1 3,160,460 - HP15_3015 0.36 -0.6 3,160,494 + HP15_3015 0.39 +0.2 3,160,597 - HP15_3015 0.49 -0.3 3,160,610 + HP15_3015 0.50 -0.3 3,160,618 - HP15_3015 0.51 -0.5 3,160,711 - HP15_3015 0.59 +0.5 3,160,728 - HP15_3015 0.61 +0.5 3,160,730 + HP15_3015 0.61 -0.3 3,160,883 + HP15_3015 0.75 -0.6 3,160,997 - HP15_3015 0.86 -0.3 3,160,997 - HP15_3015 0.86 +0.3
Or see this region's nucleotide sequence