Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_0241

Experiment: Vanillin 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_0239 and Psest_0240 are separated by 115 nucleotidesPsest_0240 and Psest_0241 are separated by 100 nucleotidesPsest_0241 and Psest_0242 overlap by 17 nucleotides Psest_0239: Psest_0239 - formamidopyrimidine-DNA glycosylase (fpg), at 249,688 to 250,500 _0239 Psest_0240: Psest_0240 - hypothetical protein, at 250,616 to 250,957 _0240 Psest_0241: Psest_0241 - Na+/phosphate symporter, at 251,058 to 252,896 _0241 Psest_0242: Psest_0242 - gamma-glutamyltranspeptidase, at 252,880 to 254,613 _0242 Position (kb) 251 252 253Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 250.197 kb on + strand, within Psest_0239at 250.197 kb on + strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.198 kb on - strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.201 kb on + strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.202 kb on - strand, within Psest_0239at 250.477 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.560 kb on + strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.561 kb on - strandat 250.562 kb on + strandat 250.563 kb on - strandat 250.563 kb on - strandat 250.563 kb on - strandat 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.724 kb on + strand, within Psest_0240at 250.725 kb on - strand, within Psest_0240at 250.725 kb on - strand, within Psest_0240at 250.725 kb on - strand, within Psest_0240at 250.748 kb on + strand, within Psest_0240at 251.019 kb on + strandat 251.203 kb on + strandat 251.203 kb on + strandat 251.204 kb on - strandat 251.204 kb on - strandat 251.326 kb on + strand, within Psest_0241at 251.342 kb on + strand, within Psest_0241at 251.343 kb on - strand, within Psest_0241at 251.343 kb on - strand, within Psest_0241at 251.343 kb on - strand, within Psest_0241at 251.365 kb on + strand, within Psest_0241at 251.408 kb on + strand, within Psest_0241at 251.483 kb on - strand, within Psest_0241at 251.623 kb on - strand, within Psest_0241at 251.623 kb on - strand, within Psest_0241at 251.623 kb on - strand, within Psest_0241at 251.623 kb on - strand, within Psest_0241at 251.866 kb on + strand, within Psest_0241at 251.866 kb on + strand, within Psest_0241at 251.866 kb on + strand, within Psest_0241at 251.866 kb on + strand, within Psest_0241at 251.866 kb on + strand, within Psest_0241at 251.866 kb on + strand, within Psest_0241at 251.866 kb on + strand, within Psest_0241at 251.866 kb on + strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 251.867 kb on - strand, within Psest_0241at 252.150 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.258 kb on + strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.259 kb on - strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.365 kb on + strand, within Psest_0241at 252.378 kb on + strand, within Psest_0241at 252.378 kb on + strand, within Psest_0241at 252.525 kb on + strand, within Psest_0241at 252.526 kb on - strand, within Psest_0241at 252.526 kb on - strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.561 kb on + strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.562 kb on - strand, within Psest_0241at 252.788 kb on + strandat 252.788 kb on + strandat 252.789 kb on - strandat 252.894 kb on + strandat 252.986 kb on + strandat 253.088 kb on + strand, within Psest_0242at 253.089 kb on - strand, within Psest_0242at 253.089 kb on - strand, within Psest_0242at 253.089 kb on - strand, within Psest_0242at 253.096 kb on + strand, within Psest_0242at 253.096 kb on + strand, within Psest_0242at 253.097 kb on - strand, within Psest_0242at 253.097 kb on - strand, within Psest_0242at 253.097 kb on - strand, within Psest_0242at 253.097 kb on - strand, within Psest_0242at 253.109 kb on + strand, within Psest_0242at 253.109 kb on + strand, within Psest_0242at 253.110 kb on - strand, within Psest_0242at 253.166 kb on + strand, within Psest_0242at 253.326 kb on - strand, within Psest_0242at 253.482 kb on + strand, within Psest_0242at 253.483 kb on - strand, within Psest_0242at 253.577 kb on + strand, within Psest_0242at 253.838 kb on + strand, within Psest_0242at 253.838 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.891 kb on + strand, within Psest_0242at 253.892 kb on - strand, within Psest_0242at 253.892 kb on - strand, within Psest_0242at 253.892 kb on - strand, within Psest_0242

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2 mM
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250,197 + Psest_0239 0.63 -0.7
250,197 + Psest_0239 0.63 +0.1
250,198 - Psest_0239 0.63 +0.3
250,198 - Psest_0239 0.63 +0.5
250,198 - Psest_0239 0.63 +0.7
250,198 - Psest_0239 0.63 +1.5
250,198 - Psest_0239 0.63 +0.5
250,201 + Psest_0239 0.63 +0.5
250,201 + Psest_0239 0.63 -1.1
250,201 + Psest_0239 0.63 -0.1
250,201 + Psest_0239 0.63 +0.3
250,201 + Psest_0239 0.63 -0.3
250,201 + Psest_0239 0.63 -0.7
250,201 + Psest_0239 0.63 -0.3
250,201 + Psest_0239 0.63 -0.1
250,201 + Psest_0239 0.63 +1.0
250,201 + Psest_0239 0.63 -0.7
250,202 - Psest_0239 0.63 +0.1
250,202 - Psest_0239 0.63 -0.2
250,202 - Psest_0239 0.63 +1.3
250,202 - Psest_0239 0.63 +1.9
250,202 - Psest_0239 0.63 +1.3
250,202 - Psest_0239 0.63 +0.3
250,202 - Psest_0239 0.63 +0.1
250,477 + +0.3
250,560 + +0.2
250,560 + -0.3
250,560 + +0.2
250,560 + +0.7
250,560 + +0.3
250,561 - +1.6
250,561 - +0.5
250,561 - +1.3
250,561 - +1.3
250,561 - +1.0
250,561 - +1.7
250,561 - -0.9
250,561 - -0.3
250,561 - -1.5
250,561 - -1.0
250,561 - -1.0
250,561 - -0.7
250,562 + +0.2
250,563 - -0.0
250,563 - -0.3
250,563 - -0.7
250,724 + Psest_0240 0.32 -0.6
250,724 + Psest_0240 0.32 +0.5
250,724 + Psest_0240 0.32 +0.0
250,724 + Psest_0240 0.32 +0.5
250,724 + Psest_0240 0.32 -3.3
250,724 + Psest_0240 0.32 -1.3
250,724 + Psest_0240 0.32 -0.3
250,724 + Psest_0240 0.32 -1.5
250,725 - Psest_0240 0.32 -0.4
250,725 - Psest_0240 0.32 +1.7
250,725 - Psest_0240 0.32 +0.7
250,748 + Psest_0240 0.39 -1.0
251,019 + +0.3
251,203 + +0.7
251,203 + -0.4
251,204 - +0.4
251,204 - +0.5
251,326 + Psest_0241 0.15 +1.1
251,342 + Psest_0241 0.15 +1.3
251,343 - Psest_0241 0.15 +2.3
251,343 - Psest_0241 0.15 -0.0
251,343 - Psest_0241 0.15 -0.8
251,365 + Psest_0241 0.17 +0.6
251,408 + Psest_0241 0.19 -0.0
251,483 - Psest_0241 0.23 +0.4
251,623 - Psest_0241 0.31 +0.3
251,623 - Psest_0241 0.31 +1.3
251,623 - Psest_0241 0.31 +0.3
251,623 - Psest_0241 0.31 +0.2
251,866 + Psest_0241 0.44 -0.7
251,866 + Psest_0241 0.44 +0.5
251,866 + Psest_0241 0.44 -0.7
251,866 + Psest_0241 0.44 +0.3
251,866 + Psest_0241 0.44 +1.3
251,866 + Psest_0241 0.44 +0.1
251,866 + Psest_0241 0.44 +0.9
251,866 + Psest_0241 0.44 -0.3
251,867 - Psest_0241 0.44 +0.1
251,867 - Psest_0241 0.44 +0.2
251,867 - Psest_0241 0.44 +0.3
251,867 - Psest_0241 0.44 +1.3
251,867 - Psest_0241 0.44 -0.4
251,867 - Psest_0241 0.44 -0.5
251,867 - Psest_0241 0.44 -0.7
251,867 - Psest_0241 0.44 +0.5
251,867 - Psest_0241 0.44 +1.2
251,867 - Psest_0241 0.44 -0.8
251,867 - Psest_0241 0.44 -0.4
251,867 - Psest_0241 0.44 +0.8
252,150 + Psest_0241 0.59 +0.3
252,258 + Psest_0241 0.65 +1.3
252,258 + Psest_0241 0.65 -0.4
252,258 + Psest_0241 0.65 -0.0
252,258 + Psest_0241 0.65 +0.3
252,258 + Psest_0241 0.65 -0.0
252,258 + Psest_0241 0.65 +1.6
252,258 + Psest_0241 0.65 +1.3
252,258 + Psest_0241 0.65 +1.3
252,259 - Psest_0241 0.65 +0.6
252,259 - Psest_0241 0.65 -0.5
252,259 - Psest_0241 0.65 -1.4
252,259 - Psest_0241 0.65 +0.7
252,259 - Psest_0241 0.65 +0.5
252,259 - Psest_0241 0.65 +0.7
252,259 - Psest_0241 0.65 +1.1
252,365 + Psest_0241 0.71 +1.4
252,365 + Psest_0241 0.71 +0.3
252,365 + Psest_0241 0.71 -0.7
252,365 + Psest_0241 0.71 +1.3
252,365 + Psest_0241 0.71 +1.3
252,365 + Psest_0241 0.71 +0.6
252,378 + Psest_0241 0.72 +0.3
252,378 + Psest_0241 0.72 +0.1
252,525 + Psest_0241 0.80 -0.7
252,526 - Psest_0241 0.80 -0.2
252,526 - Psest_0241 0.80 +0.6
252,561 + Psest_0241 0.82 -0.2
252,561 + Psest_0241 0.82 +0.5
252,561 + Psest_0241 0.82 +0.7
252,561 + Psest_0241 0.82 +2.9
252,561 + Psest_0241 0.82 -0.3
252,561 + Psest_0241 0.82 -0.4
252,561 + Psest_0241 0.82 +1.3
252,562 - Psest_0241 0.82 +0.9
252,562 - Psest_0241 0.82 +0.0
252,562 - Psest_0241 0.82 +1.2
252,562 - Psest_0241 0.82 +2.1
252,562 - Psest_0241 0.82 +1.2
252,562 - Psest_0241 0.82 +1.9
252,562 - Psest_0241 0.82 +0.7
252,562 - Psest_0241 0.82 +2.0
252,562 - Psest_0241 0.82 +0.7
252,788 + +0.1
252,788 + +1.7
252,789 - +1.6
252,894 + -1.0
252,986 + -0.3
253,088 + Psest_0242 0.12 +0.1
253,089 - Psest_0242 0.12 +0.7
253,089 - Psest_0242 0.12 +0.5
253,089 - Psest_0242 0.12 +0.8
253,096 + Psest_0242 0.12 +1.3
253,096 + Psest_0242 0.12 +1.3
253,097 - Psest_0242 0.13 +0.8
253,097 - Psest_0242 0.13 +1.3
253,097 - Psest_0242 0.13 -0.0
253,097 - Psest_0242 0.13 -0.9
253,109 + Psest_0242 0.13 -0.3
253,109 + Psest_0242 0.13 +0.7
253,110 - Psest_0242 0.13 -0.6
253,166 + Psest_0242 0.16 -2.3
253,326 - Psest_0242 0.26 +0.5
253,482 + Psest_0242 0.35 +1.3
253,483 - Psest_0242 0.35 -1.1
253,577 + Psest_0242 0.40 +1.3
253,838 + Psest_0242 0.55 -0.5
253,838 + Psest_0242 0.55 +0.7
253,891 + Psest_0242 0.58 +1.3
253,891 + Psest_0242 0.58 +1.3
253,891 + Psest_0242 0.58 +1.3
253,891 + Psest_0242 0.58 -1.9
253,892 - Psest_0242 0.58 +2.9
253,892 - Psest_0242 0.58 +1.3
253,892 - Psest_0242 0.58 +1.3

Or see this region's nucleotide sequence