Experiment: Vanillin 2 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psest_0170 and Psest_0172 are separated by 218 nucleotides Psest_0172 and Psest_0173 overlap by 4 nucleotides Psest_0173 and Psest_0174 are separated by 129 nucleotides Psest_0174 and Psest_0175 are separated by 16 nucleotides
Psest_0170: Psest_0170 - 5,10-methenyltetrahydrofolate synthetase, at 166,013 to 166,615
_0170
Psest_0172: Psest_0172 - Uncharacterized protein conserved in bacteria, at 166,834 to 167,148
_0172
Psest_0173: Psest_0173 - TIGR02449 family protein, at 167,145 to 167,354
_0173
Psest_0174: Psest_0174 - Uncharacterized protein conserved in bacteria, at 167,484 to 168,038
_0174
Psest_0175: Psest_0175 - Xaa-Pro aminopeptidase, at 168,055 to 169,389
_0175
Position (kb) 167
168
169 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 166.649 kb on + strand at 166.650 kb on - strand at 166.683 kb on + strand at 166.695 kb on + strand at 166.696 kb on - strand at 166.696 kb on - strand at 166.731 kb on + strand at 166.731 kb on + strand at 166.731 kb on + strand at 166.731 kb on + strand at 166.731 kb on + strand at 166.732 kb on - strand at 166.732 kb on - strand at 166.732 kb on - strand at 166.732 kb on - strand at 166.737 kb on + strand at 166.737 kb on + strand at 166.749 kb on + strand at 166.750 kb on - strand at 166.809 kb on + strand at 166.809 kb on + strand at 166.809 kb on + strand at 166.809 kb on + strand at 166.810 kb on - strand at 166.810 kb on - strand at 166.810 kb on - strand at 166.810 kb on - strand at 166.810 kb on - strand at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.897 kb on + strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 166.898 kb on - strand, within Psest_0172 at 167.102 kb on + strand, within Psest_0172 at 167.102 kb on + strand, within Psest_0172 at 167.102 kb on + strand, within Psest_0172 at 167.103 kb on - strand at 167.103 kb on - strand, within Psest_0172 at 167.103 kb on - strand, within Psest_0172 at 167.433 kb on - strand at 167.433 kb on - strand at 167.454 kb on - strand at 167.454 kb on - strand at 167.454 kb on - strand at 167.454 kb on - strand at 167.940 kb on + strand, within Psest_0174 at 167.940 kb on + strand, within Psest_0174 at 167.941 kb on - strand, within Psest_0174 at 167.941 kb on - strand, within Psest_0174 at 167.941 kb on - strand, within Psest_0174 at 167.958 kb on + strand, within Psest_0174 at 167.958 kb on + strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 167.959 kb on - strand, within Psest_0174 at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.154 kb on + strand at 168.274 kb on + strand, within Psest_0175 at 168.348 kb on + strand, within Psest_0175 at 168.436 kb on + strand, within Psest_0175 at 168.437 kb on - strand, within Psest_0175 at 168.440 kb on - strand, within Psest_0175 at 168.784 kb on + strand, within Psest_0175 at 168.856 kb on + strand, within Psest_0175 at 168.877 kb on - strand, within Psest_0175 at 168.933 kb on - strand, within Psest_0175 at 168.963 kb on + strand, within Psest_0175
Per-strain Table
Position Strand Gene LocusTag Fraction Vanillin 2 mM remove 166,649 + +0.4 166,650 - -1.2 166,683 + +1.9 166,695 + +1.2 166,696 - -2.4 166,696 - +0.4 166,731 + +0.4 166,731 + +2.5 166,731 + +0.4 166,731 + +0.3 166,731 + +0.1 166,732 - +0.8 166,732 - +0.1 166,732 - -0.4 166,732 - +0.1 166,737 + -0.3 166,737 + +0.7 166,749 + +0.4 166,750 - +1.0 166,809 + +2.4 166,809 + +1.3 166,809 + -1.4 166,809 + -0.2 166,810 - +0.5 166,810 - +0.6 166,810 - -0.6 166,810 - +1.2 166,810 - -0.8 166,897 + Psest_0172 0.20 +0.8 166,897 + Psest_0172 0.20 +0.2 166,897 + Psest_0172 0.20 -0.1 166,897 + Psest_0172 0.20 +1.7 166,897 + Psest_0172 0.20 +0.1 166,897 + Psest_0172 0.20 -0.5 166,897 + Psest_0172 0.20 +0.4 166,897 + Psest_0172 0.20 +0.9 166,897 + Psest_0172 0.20 +0.6 166,898 - Psest_0172 0.20 +0.4 166,898 - Psest_0172 0.20 +0.2 166,898 - Psest_0172 0.20 +0.6 166,898 - Psest_0172 0.20 -0.6 166,898 - Psest_0172 0.20 +0.1 166,898 - Psest_0172 0.20 -0.5 166,898 - Psest_0172 0.20 +0.6 166,898 - Psest_0172 0.20 +2.4 166,898 - Psest_0172 0.20 +0.7 166,898 - Psest_0172 0.20 +0.0 166,898 - Psest_0172 0.20 +3.7 167,102 + Psest_0172 0.85 -0.2 167,102 + Psest_0172 0.85 +0.6 167,102 + Psest_0172 0.85 +0.8 167,103 - +1.4 167,103 - Psest_0172 0.85 -0.2 167,103 - Psest_0172 0.85 +0.4 167,433 - -0.5 167,433 - -0.5 167,454 - -0.2 167,454 - -2.2 167,454 - -0.7 167,454 - -1.2 167,940 + Psest_0174 0.82 -0.5 167,940 + Psest_0174 0.82 +0.0 167,941 - Psest_0174 0.82 -0.1 167,941 - Psest_0174 0.82 +0.4 167,941 - Psest_0174 0.82 -0.4 167,958 + Psest_0174 0.85 +0.5 167,958 + Psest_0174 0.85 -0.1 167,959 - Psest_0174 0.86 -0.4 167,959 - Psest_0174 0.86 -0.2 167,959 - Psest_0174 0.86 -0.7 167,959 - Psest_0174 0.86 +0.8 168,154 + +0.4 168,154 + +1.9 168,154 + -1.2 168,154 + +0.4 168,154 + +0.8 168,154 + -1.4 168,154 + +2.4 168,274 + Psest_0175 0.16 -1.6 168,348 + Psest_0175 0.22 -1.5 168,436 + Psest_0175 0.29 -0.1 168,437 - Psest_0175 0.29 -1.8 168,440 - Psest_0175 0.29 -1.5 168,784 + Psest_0175 0.55 -0.2 168,856 + Psest_0175 0.60 -0.5 168,877 - Psest_0175 0.62 -0.2 168,933 - Psest_0175 0.66 -0.8 168,963 + Psest_0175 0.68 +0.5
Or see this region's nucleotide sequence