Strain Fitness in Pseudomonas stutzeri RCH2 around Psest_1516

Experiment: Vanillin 2 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsest_1515 and Psest_1516 are separated by 16 nucleotidesPsest_1516 and Psest_1517 are separated by 95 nucleotides Psest_1515: Psest_1515 - dihydrodipicolinate synthase, at 1,614,044 to 1,614,922 _1515 Psest_1516: Psest_1516 - Uncharacterized lipoprotein, at 1,614,939 to 1,616,036 _1516 Psest_1517: Psest_1517 - phosphoribosylaminoimidazole-succinocarboxamide synthase, at 1,616,132 to 1,617,001 _1517 Position (kb) 1614 1615 1616 1617Strain fitness (log2 ratio) -3 -2 -1 0 1at 1614.002 kb on + strandat 1614.002 kb on + strandat 1614.002 kb on + strandat 1615.260 kb on + strand, within Psest_1516at 1615.479 kb on + strand, within Psest_1516at 1615.479 kb on + strand, within Psest_1516at 1615.479 kb on + strand, within Psest_1516at 1615.479 kb on + strand, within Psest_1516at 1615.800 kb on + strand, within Psest_1516at 1615.804 kb on - strand, within Psest_1516at 1616.983 kb on + strandat 1616.983 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Vanillin 2 mM
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1,614,002 + +0.3
1,614,002 + -0.8
1,614,002 + +0.9
1,615,260 + Psest_1516 0.29 +0.0
1,615,479 + Psest_1516 0.49 -3.0
1,615,479 + Psest_1516 0.49 -3.0
1,615,479 + Psest_1516 0.49 -3.0
1,615,479 + Psest_1516 0.49 +0.0
1,615,800 + Psest_1516 0.78 -0.3
1,615,804 - Psest_1516 0.79 -1.3
1,616,983 + -0.6
1,616,983 + -0.5

Or see this region's nucleotide sequence