Strain Fitness in Shewanella amazonensis SB2B around Sama_1796

Experiment: Vanillin 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 2.5 mM
2,186,822	-		Sama_1794	0.67	-3.0
2,186,855	+		Sama_1794	0.70	-2.7
2,186,855	+		Sama_1794	0.70	-1.7
2,186,855	+		Sama_1794	0.70	-3.2
2,186,856	-		Sama_1794	0.70	-2.9
2,186,856	-		Sama_1794	0.70	-1.3
2,186,856	-		Sama_1794	0.70	-2.9
2,186,856	-		Sama_1794	0.70	-0.7
2,186,947	+		Sama_1794	0.80	-2.3
2,187,000	+		Sama_1794	0.85	-4.2
2,187,000	+		Sama_1794	0.85	-3.2
2,187,000	+		Sama_1794	0.85	-3.6
2,187,000	+		Sama_1794	0.85	+0.3
2,187,001	-		Sama_1794	0.85	-2.0
2,187,001	-		Sama_1794	0.85	-1.0
2,187,001	-		Sama_1794	0.85	-1.7
2,187,008	+		Sama_1794	0.86	-2.9
2,187,120	-				-3.0
2,187,120	-				-2.9
2,187,202	-				-2.0
2,187,202	-				-3.2
2,187,220	+				+0.9
2,187,221	-				-2.5
2,187,227	+				-0.8
2,187,253	-				-1.7
2,187,279	+				-2.7
2,187,279	+				-2.5
2,187,279	+				-2.7
2,187,279	+				-2.5
2,187,280	-				-0.7
2,187,280	-				-3.0
2,187,281	+				-1.1
2,187,304	+				-2.5
2,187,304	+				-3.5
2,187,304	+				-2.3
2,187,308	+		Sama_1795	0.10	-2.3
2,187,309	-		Sama_1795	0.11	-3.3
2,187,309	-		Sama_1795	0.11	-1.3
2,187,366	-		Sama_1795	0.23	-3.0
2,187,419	+		Sama_1795	0.34	-0.7
2,187,420	-		Sama_1795	0.34	-0.8
2,187,431	+		Sama_1795	0.36	-2.7
2,187,442	-		Sama_1795	0.38	-2.5
2,187,458	+		Sama_1795	0.42	-2.5
2,187,459	-		Sama_1795	0.42	-3.2
2,187,523	-		Sama_1795	0.55	-2.7
2,187,540	-		Sama_1795	0.59	-2.7
2,187,549	+		Sama_1795	0.61	-1.3
2,187,590	+		Sama_1795	0.69	-1.7
2,187,618	-		Sama_1795	0.75	-2.0
2,187,620	+		Sama_1795	0.75	-2.0
2,187,744	+				-2.8
2,187,744	+				-2.5
2,187,744	+				-2.3
2,187,744	+				-2.5
2,187,744	+				-3.8
2,187,744	+				-1.1
2,187,745	-				-3.2
2,187,745	-				-2.3
2,187,893	-				-2.7
2,187,893	-				+0.3
2,187,893	-				-2.3
2,187,895	+				-1.3
2,187,967	+				-1.7
2,187,967	+				-3.0
2,187,984	-		Sama_1796	0.10	-1.7
2,188,047	+		Sama_1796	0.13	-2.9
2,188,047	+		Sama_1796	0.13	-3.5
2,188,080	+		Sama_1796	0.14	-1.3
2,188,080	+		Sama_1796	0.14	-2.0
2,188,080	+		Sama_1796	0.14	-3.6
2,188,080	+		Sama_1796	0.14	-2.0
2,188,081	-		Sama_1796	0.14	-2.9
2,188,086	-		Sama_1796	0.14	-3.0
2,188,111	-		Sama_1796	0.15	+0.3
2,188,173	-		Sama_1796	0.18	-0.7
2,188,173	-		Sama_1796	0.18	-3.3
2,188,173	-		Sama_1796	0.18	-3.5
2,188,173	-		Sama_1796	0.18	-2.3
2,188,177	+		Sama_1796	0.18	-3.2
2,188,177	+		Sama_1796	0.18	-2.5
2,188,177	+		Sama_1796	0.18	-0.3
2,188,177	+		Sama_1796	0.18	-2.3
2,188,177	+		Sama_1796	0.18	-2.5
2,188,178	-		Sama_1796	0.18	-2.5
2,188,178	-		Sama_1796	0.18	-2.9
2,188,178	-		Sama_1796	0.18	-1.7
2,188,178	-		Sama_1796	0.18	-2.5
2,188,178	-		Sama_1796	0.18	+1.0
2,188,180	-		Sama_1796	0.18	+0.3
2,188,180	-		Sama_1796	0.18	-2.7
2,188,202	+		Sama_1796	0.19	-1.7
2,188,202	+		Sama_1796	0.19	-2.9
2,188,202	+		Sama_1796	0.19	-2.3
2,188,202	+		Sama_1796	0.19	-3.3
2,188,203	-		Sama_1796	0.19	-2.7
2,188,203	-		Sama_1796	0.19	-2.9
2,188,207	+		Sama_1796	0.19	-3.4
2,188,207	+		Sama_1796	0.19	-2.9
2,188,208	-		Sama_1796	0.19	-2.7
2,188,208	-		Sama_1796	0.19	-1.3
2,188,209	+		Sama_1796	0.19	-2.5
2,188,251	+		Sama_1796	0.21	-0.9
2,188,251	+		Sama_1796	0.21	+0.0
2,188,252	-		Sama_1796	0.21	-3.2
2,188,257	+		Sama_1796	0.21	-2.9
2,188,336	+		Sama_1796	0.25	-2.0
2,188,336	+		Sama_1796	0.25	-1.7
2,188,337	-		Sama_1796	0.25	-3.2
2,188,337	-		Sama_1796	0.25	-3.7
2,188,401	-		Sama_1796	0.27	-1.3
2,188,442	-		Sama_1796	0.29	-3.0
2,188,454	+		Sama_1796	0.30	-3.8
2,188,455	-		Sama_1796	0.30	-3.2
2,188,455	-		Sama_1796	0.30	-2.3
2,188,490	+		Sama_1796	0.31	-1.3
2,188,490	+		Sama_1796	0.31	-1.7
2,188,520	-		Sama_1796	0.32	-2.5
2,188,520	-		Sama_1796	0.32	-2.0
2,188,520	-		Sama_1796	0.32	-3.0
2,188,520	-		Sama_1796	0.32	-1.3
2,188,520	-		Sama_1796	0.32	-2.0
2,188,520	-		Sama_1796	0.32	-2.0
2,188,565	-		Sama_1796	0.34	-0.7
2,188,710	-		Sama_1796	0.40	-1.3
2,188,710	-		Sama_1796	0.40	-2.4
2,188,794	-		Sama_1796	0.44	-2.9
2,188,806	-		Sama_1796	0.44	-2.0
2,188,884	+		Sama_1796	0.48	-2.0
2,188,929	-		Sama_1796	0.50	-2.5
2,188,997	+		Sama_1796	0.52	-2.3
2,188,998	-		Sama_1796	0.52	-1.3
2,188,998	-		Sama_1796	0.52	-1.7
2,189,013	+		Sama_1796	0.53	-3.0
2,189,014	-		Sama_1796	0.53	-2.9
2,189,026	+		Sama_1796	0.54	-1.7
2,189,065	+		Sama_1796	0.55	-3.3
2,189,065	+		Sama_1796	0.55	+0.3
2,189,065	+		Sama_1796	0.55	-1.7
2,189,065	+		Sama_1796	0.55	-2.5
2,189,065	+		Sama_1796	0.55	-0.7
2,189,065	+		Sama_1796	0.55	-2.3
2,189,065	+		Sama_1796	0.55	-2.3
2,189,065	+		Sama_1796	0.55	-2.0
2,189,066	-		Sama_1796	0.55	-3.3
2,189,066	-		Sama_1796	0.55	-1.7
2,189,066	-		Sama_1796	0.55	-1.7
2,189,066	-		Sama_1796	0.55	-3.4
2,189,066	-		Sama_1796	0.55	-3.5
2,189,066	-		Sama_1796	0.55	-3.2
2,189,249	+		Sama_1796	0.63	-0.7
2,189,261	+		Sama_1796	0.63	+0.0
2,189,262	-		Sama_1796	0.64	-3.6
2,189,269	-		Sama_1796	0.64	-2.3
2,189,311	-		Sama_1796	0.66	+0.3
2,189,469	+		Sama_1796	0.72	-3.0
2,189,482	-		Sama_1796	0.73	-3.3
2,189,554	+		Sama_1796	0.76	+0.3
2,189,554	+		Sama_1796	0.76	-2.3
2,189,555	-		Sama_1796	0.76	-2.9
2,189,555	-		Sama_1796	0.76	-3.6
2,189,679	+		Sama_1796	0.81	-1.7
2,189,721	-		Sama_1796	0.83	-3.4
2,189,721	-		Sama_1796	0.83	-2.0
2,189,729	+		Sama_1796	0.83	-3.0
2,189,729	+		Sama_1796	0.83	+0.3
2,189,729	+		Sama_1796	0.83	-2.5
2,189,802	+		Sama_1796	0.86	-2.9
2,189,803	-		Sama_1796	0.86	-1.5
2,189,820	+		Sama_1796	0.87	-3.0
2,189,904	+				-3.6
2,189,905	-				-2.3
2,189,905	-				-3.0
2,189,949	+				-2.3
2,189,950	-				-2.3
2,189,972	+				-3.2
2,189,973	-				-1.3
2,190,005	-				-3.4
2,190,009	+				-2.0
2,190,009	+				-3.0
2,190,009	+				-1.7
2,190,010	-				+0.3
2,190,010	-				-1.7
2,190,010	-				-0.7
2,190,047	+				-2.0
2,190,052	+				-2.7
2,190,052	+				-1.7
2,190,052	+				-2.9
2,190,065	+				-3.9
2,190,113	+				-0.2
2,190,123	-				-1.7
2,190,134	+				-3.4
2,190,134	+				-1.3
2,190,134	+				+0.3
2,190,134	+				-2.5
2,190,134	+				-2.3
2,190,135	-				-2.0
2,190,141	+				-1.8
2,190,141	+				-1.3
2,190,141	+				-2.5
2,190,142	-				-4.2
2,190,142	-				-2.3
2,190,229	+		Sama_1797	0.50	-2.9
2,190,229	+		Sama_1797	0.50	+0.3
2,190,230	-		Sama_1797	0.50	-3.5
2,190,273	-		Sama_1797	0.72	-0.7
2,190,488	+		Sama_1798	0.23	-2.3
2,190,488	+		Sama_1798	0.23	+0.3
2,190,488	+		Sama_1798	0.23	-3.5
2,190,494	-		Sama_1798	0.24	-2.7
2,190,512	+		Sama_1798	0.26	-0.7
2,190,512	+		Sama_1798	0.26	-0.0
2,190,513	-		Sama_1798	0.27	-0.5
2,190,513	-		Sama_1798	0.27	-3.3
2,190,555	+		Sama_1798	0.33	-0.6
2,190,556	-		Sama_1798	0.33	-2.0
2,190,583	+		Sama_1798	0.37	-0.3
2,190,584	-		Sama_1798	0.37	-0.7
2,190,635	+		Sama_1798	0.44	-1.7
2,190,635	+		Sama_1798	0.44	-2.0
2,190,635	+		Sama_1798	0.44	-2.0
2,190,636	-		Sama_1798	0.44	-2.3
2,190,636	-		Sama_1798	0.44	-1.7
2,190,636	-		Sama_1798	0.44	-2.7
2,190,636	-		Sama_1798	0.44	-2.3
2,190,636	-		Sama_1798	0.44	-2.9
2,190,636	-		Sama_1798	0.44	-1.3
2,190,699	+		Sama_1798	0.53	-3.9
2,190,700	-		Sama_1798	0.54	-2.7
2,190,768	+		Sama_1798	0.63	-1.7
2,190,797	+		Sama_1798	0.68	-2.7
2,190,850	+		Sama_1798	0.75	-2.9
2,190,851	-		Sama_1798	0.75	-2.3
2,190,851	-		Sama_1798	0.75	-1.7
2,190,930	+		Sama_1798	0.87	-2.3
2,190,930	+		Sama_1798	0.87	-3.4
2,190,930	+		Sama_1798	0.87	-2.0
2,190,930	+		Sama_1798	0.87	-3.5
2,190,972	+				-2.3
2,190,973	-				-2.5
2,190,993	+				-2.5
2,190,993	+				-3.2
2,190,995	+				+0.3
2,190,995	+				+0.9
2,190,995	+				+0.1
2,190,995	+				-0.4
2,190,995	+				-0.7
2,190,996	-				-1.4
2,190,996	-				-1.5
2,190,996	-				-0.4
2,190,996	-				-1.0
2,190,996	-				-3.1
2,190,996	-				-2.7
2,190,996	-				-0.4
2,190,996	-				-2.3
2,190,996	-				-1.0
2,190,996	-				-0.5
2,190,997	+				-1.3
2,190,997	+				-1.7
2,190,997	+				-2.0
2,190,997	+				-3.2
2,190,997	+				-1.7
2,190,997	+				-3.4
2,190,997	+				-3.8
2,190,997	+				-3.5
2,190,998	-				-2.5
2,190,998	-				-1.7
2,190,998	-				-2.0
2,190,998	-				-1.3
2,190,998	-				-2.3
2,191,049	+				+0.7
2,191,054	-				-0.0