Strain Fitness in Shewanella amazonensis SB2B around Sama_1357

Experiment: Vanillin 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 2.5 mM
1,644,915	-				-4.0
1,644,920	+				+0.1
1,644,920	+				-0.9
1,644,921	-				+1.6
1,644,934	+				+0.1
1,644,972	+				+1.9
1,644,972	+				+0.8
1,644,994	-				+1.2
1,644,994	-				+0.4
1,645,019	+				-0.9
1,645,023	+				+0.7
1,645,023	+				-0.4
1,645,023	+				+0.2
1,645,024	-				-0.1
1,645,064	-				+1.2
1,645,112	+				+0.1
1,645,113	-				+2.2
1,645,116	+				+0.0
1,645,116	+				-1.1
1,645,117	-				+0.4
1,645,117	-				+0.7
1,645,117	-				+0.4
1,645,117	-				+0.4
1,645,117	-				-0.9
1,645,127	+				-1.6
1,645,128	-				-0.1
1,645,129	+				+1.9
1,645,129	+				-0.9
1,645,129	+				+1.8
1,645,129	+				+0.5
1,645,129	+				-0.6
1,645,129	+				+0.2
1,645,129	+				-0.5
1,645,129	+				+0.9
1,645,129	+				-0.5
1,645,129	+				+0.8
1,645,129	+				+1.0
1,645,130	-				+0.1
1,645,130	-				+0.2
1,645,130	-				-2.2
1,645,130	-				+0.7
1,645,130	-				+0.2
1,645,130	-				+0.2
1,645,130	-				-0.6
1,645,130	-				-0.3
1,645,130	-				+0.4
1,645,130	-				-0.2
1,645,130	-				+0.1
1,645,130	-				-0.5
1,645,130	-				-0.4
1,645,130	-				-1.6
1,645,133	+				+0.1
1,645,134	-				+0.8
1,645,134	-				-0.4
1,645,135	+				+0.4
1,645,135	+				+0.8
1,645,136	-				+0.0
1,645,194	-				+0.8
1,645,210	+				-0.0
1,645,227	+				-0.9
1,645,228	-				-0.4
1,645,228	-				-2.0
1,645,402	+		Sama_1356	0.32	-0.6
1,645,403	+		Sama_1356	0.32	+1.1
1,645,404	-		Sama_1356	0.32	-0.5
1,645,407	+		Sama_1356	0.33	-0.2
1,645,425	+		Sama_1356	0.35	-1.6
1,645,431	+		Sama_1356	0.36	-1.6
1,645,434	+		Sama_1356	0.37	-3.0
1,645,434	+		Sama_1356	0.37	+0.4
1,645,435	-		Sama_1356	0.37	-1.7
1,645,435	-		Sama_1356	0.37	-2.4
1,645,435	-		Sama_1356	0.37	-0.1
1,645,481	-		Sama_1356	0.44	-0.5
1,645,553	-		Sama_1356	0.55	+1.0
1,645,618	+		Sama_1356	0.65	-0.6
1,645,628	-		Sama_1356	0.66	+0.7
1,645,647	+		Sama_1356	0.69	+1.2
1,645,648	-		Sama_1356	0.69	+1.8
1,645,665	+		Sama_1356	0.72	-2.0
1,645,665	+		Sama_1356	0.72	-1.3
1,645,745	+		Sama_1356	0.84	-0.0
1,645,745	+		Sama_1356	0.84	-1.4
1,645,745	+		Sama_1356	0.84	+0.7
1,645,745	+		Sama_1356	0.84	-0.4
1,645,745	+		Sama_1356	0.84	+1.2
1,645,745	+		Sama_1356	0.84	+0.4
1,645,745	+		Sama_1356	0.84	+0.4
1,645,745	+		Sama_1356	0.84	-0.1
1,645,745	+		Sama_1356	0.84	+1.8
1,645,745	+		Sama_1356	0.84	-0.6
1,645,746	-		Sama_1356	0.84	+0.5
1,645,746	-		Sama_1356	0.84	-0.0
1,645,746	-		Sama_1356	0.84	+0.4
1,645,746	-		Sama_1356	0.84	+0.1
1,645,746	-		Sama_1356	0.84	-1.6
1,645,746	-		Sama_1356	0.84	+1.5
1,645,746	-		Sama_1356	0.84	+0.4
1,645,746	-		Sama_1356	0.84	-0.2
1,645,746	-		Sama_1356	0.84	+0.4
1,645,746	-		Sama_1356	0.84	+0.1
1,645,746	-		Sama_1356	0.84	-2.2
1,645,762	-		Sama_1356	0.87	+0.5
1,645,778	-		Sama_1356	0.89	-0.2
1,645,778	-		Sama_1356	0.89	-1.0
1,645,778	-		Sama_1356	0.89	-0.0
1,645,783	+				+1.0
1,645,783	+				+0.8
1,645,784	-				-1.0
1,645,784	-				-0.4
1,645,784	-				-1.6
1,645,787	+				+0.4
1,645,787	+				+0.2
1,645,787	+				-1.4
1,645,787	+				-1.0
1,645,788	-				+0.2
1,645,788	-				+0.0
1,645,788	-				-0.9
1,645,788	-				+0.2
1,645,791	-				-2.2
1,645,800	+				-1.2
1,645,800	+				-0.9
1,645,889	-				-0.5
1,645,926	+				-0.7
1,645,926	+				-0.2
1,645,926	+				-1.0
1,645,927	-				-0.1
1,645,945	+		Sama_1357	0.12	-0.8
1,645,945	+		Sama_1357	0.12	-1.4
1,645,946	-		Sama_1357	0.12	-1.2
1,645,946	-		Sama_1357	0.12	-0.7
1,646,130	+		Sama_1357	0.39	-1.6
1,646,130	+		Sama_1357	0.39	-0.2
1,646,266	+		Sama_1357	0.58	+1.1
1,646,322	+		Sama_1357	0.66	-0.8
1,646,322	+		Sama_1357	0.66	-3.0
1,646,323	-		Sama_1357	0.66	+0.3
1,646,323	-		Sama_1357	0.66	-0.0
1,646,323	-		Sama_1357	0.66	+0.8
1,646,323	-		Sama_1357	0.66	+2.5
1,646,433	-		Sama_1357	0.82	-1.2
1,646,462	-		Sama_1357	0.86	-1.1
1,646,488	+		Sama_1357	0.90	-1.6
1,646,488	+		Sama_1357	0.90	-0.9
1,646,488	+		Sama_1357	0.90	-0.4
1,646,489	-		Sama_1357	0.90	-2.6
1,646,497	+				-0.0
1,646,497	+				+0.0
1,646,497	+				+0.0
1,646,497	+				+0.4
1,646,498	-				-1.1
1,646,498	-				-0.9
1,646,498	-				-0.0
1,646,498	-				-0.6
1,646,529	+				+0.4
1,646,529	+				-0.9
1,646,529	+				-2.8
1,646,547	+				+1.0
1,646,547	+				-0.8
1,646,547	+				+0.1
1,646,548	-				-1.4
1,646,580	+				-1.2
1,646,580	+				-1.3
1,646,581	-				-0.2
1,646,581	-				+0.6
1,646,581	-				+0.5
1,646,615	+				-1.0
1,646,644	+				-0.2
1,646,648	+				-0.7
1,646,648	+				+0.1
1,646,648	+				-2.8
1,646,648	+				-1.2
1,646,649	-				-0.6
1,646,649	-				+1.4
1,646,649	-				-0.6
1,646,649	-				-0.7
1,646,649	-				-1.0
1,646,649	-				-0.3
1,646,649	-				-1.0
1,646,649	-				-0.8
1,646,649	-				-0.6
1,646,649	-				-0.4
1,646,649	-				+0.1
1,646,649	-				+0.4
1,646,655	-				-0.2
1,646,668	+				+1.2
1,646,668	+				+1.6
1,646,669	-				+0.7
1,646,748	-				-1.1
1,646,769	+		Sama_1358	0.11	-2.2
1,646,770	-		Sama_1358	0.12	-2.2
1,646,789	+		Sama_1358	0.14	-0.1
1,646,789	+		Sama_1358	0.14	-1.2
1,646,789	+		Sama_1358	0.14	+0.4
1,646,789	+		Sama_1358	0.14	-1.0
1,646,789	+		Sama_1358	0.14	-2.0
1,646,789	+		Sama_1358	0.14	+0.8
1,646,790	-		Sama_1358	0.14	-0.6
1,646,791	+		Sama_1358	0.14	-1.6
1,646,791	+		Sama_1358	0.14	-0.6
1,646,791	+		Sama_1358	0.14	-1.6
1,646,792	-		Sama_1358	0.14	-0.4
1,646,907	-		Sama_1358	0.27	-2.3
1,646,926	+		Sama_1358	0.29	+0.4
1,646,926	+		Sama_1358	0.29	-1.6
1,646,927	-		Sama_1358	0.29	-1.2
1,647,100	-		Sama_1358	0.49	+0.4
1,647,112	+		Sama_1358	0.50	+0.1
1,647,267	+		Sama_1358	0.67	-0.9
1,647,356	+		Sama_1358	0.77	+0.4
1,647,357	-		Sama_1358	0.77	-1.2
1,647,428	+		Sama_1358	0.85	-0.6
1,647,429	-		Sama_1358	0.86	-2.5
1,647,436	-		Sama_1358	0.86	-0.2