Strain Fitness in Shewanella amazonensis SB2B around Sama_1189

Experiment: Vanillin 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Vanillin 2.5 mM
1,455,515	+		Sama_1188	0.81	+0.6
1,455,515	+		Sama_1188	0.81	+0.3
1,455,516	-		Sama_1188	0.81	-0.3
1,455,516	-		Sama_1188	0.81	-0.2
1,455,556	+		Sama_1188	0.82	+0.3
1,455,556	+		Sama_1188	0.82	+0.4
1,455,556	+		Sama_1188	0.82	+0.2
1,455,579	-		Sama_1188	0.82	+0.2
1,455,593	+		Sama_1188	0.83	-0.6
1,455,619	+		Sama_1188	0.83	+0.4
1,455,620	-		Sama_1188	0.83	-0.2
1,455,659	+		Sama_1188	0.85	+0.1
1,455,659	+		Sama_1188	0.85	+0.2
1,455,659	+		Sama_1188	0.85	-0.2
1,455,659	+		Sama_1188	0.85	+0.4
1,455,659	+		Sama_1188	0.85	-0.7
1,455,659	+		Sama_1188	0.85	-0.0
1,455,659	+		Sama_1188	0.85	-0.1
1,455,660	-		Sama_1188	0.85	+0.8
1,455,660	-		Sama_1188	0.85	-0.2
1,455,660	-		Sama_1188	0.85	+0.5
1,455,660	-		Sama_1188	0.85	+0.0
1,455,660	-		Sama_1188	0.85	+0.1
1,455,660	-		Sama_1188	0.85	+0.0
1,455,660	-		Sama_1188	0.85	+0.4
1,455,660	-		Sama_1188	0.85	-0.9
1,455,684	+		Sama_1188	0.85	-0.5
1,455,685	-		Sama_1188	0.85	+0.4
1,455,700	+		Sama_1188	0.86	+0.4
1,455,806	+		Sama_1188	0.89	-0.4
1,455,806	+		Sama_1188	0.89	+0.4
1,455,807	-		Sama_1188	0.89	+0.2
1,455,807	-		Sama_1188	0.89	-0.4
1,455,812	-		Sama_1188	0.89	-0.8
1,455,876	-				-0.4
1,455,876	-				+0.0
1,455,922	+				+0.1
1,455,970	+				-0.6
1,455,970	+				-0.2
1,456,015	+				+0.5
1,456,015	+				-0.4
1,456,016	-				-0.5
1,456,017	+				-2.4
1,456,017	+				+0.7
1,456,017	+				+0.1
1,456,018	-				+0.0
1,456,018	-				+0.4
1,456,018	-				-0.2
1,456,018	-				-0.2
1,456,018	-				-0.4
1,456,018	-				-0.2
1,456,023	+				-0.4
1,456,024	-				+0.9
1,456,046	-				+0.3
1,456,047	+				+0.4
1,456,047	+				+0.2
1,456,047	+				+0.8
1,456,047	+				-0.2
1,456,047	+				-0.1
1,456,048	-				+0.8
1,456,048	-				+0.7
1,456,048	-				-0.4
1,456,048	-				-2.1
1,456,048	-				-0.1
1,456,048	-				+0.5
1,456,072	-				-0.5
1,456,090	+				+0.9
1,456,091	-				-0.5
1,456,183	+				-0.4
1,456,198	+				-1.1
1,456,199	-				+0.5
1,456,206	-				-0.1
1,456,255	-				-0.5
1,456,266	-				-0.9
1,456,271	+				-0.5
1,456,272	-				+0.2
1,456,298	+				+0.1
1,456,384	+				-0.0
1,456,384	+				+1.2
1,456,384	+				-1.3
1,456,384	+				-0.3
1,456,384	+				-0.7
1,456,384	+				-0.1
1,456,384	+				-0.1
1,456,384	+				+0.4
1,456,384	+				-2.8
1,456,384	+				-0.6
1,456,384	+				+1.6
1,456,385	-				+0.1
1,456,385	-				-1.9
1,456,385	-				+0.2
1,456,385	-				-0.8
1,456,385	-				-0.9
1,456,385	-				-1.1
1,456,385	-				+0.4
1,456,393	+				-2.2
1,456,393	+				-0.7
1,456,393	+				+0.0
1,456,393	+				+0.4
1,456,394	-				-0.6
1,456,394	-				-1.6
1,456,410	+				+0.7
1,456,410	+				-1.3
1,456,432	+				+0.5
1,456,459	+				-1.2
1,456,481	+				-1.0
1,456,482	-				+0.8
1,456,617	+				-0.2
1,456,687	+		Sama_1189	0.13	-1.6
1,456,687	+		Sama_1189	0.13	-1.0
1,456,688	-		Sama_1189	0.13	-0.4
1,456,704	+		Sama_1189	0.14	-2.3
1,456,705	-		Sama_1189	0.14	-0.4
1,456,806	+		Sama_1189	0.20	-0.6
1,456,806	+		Sama_1189	0.20	-0.0
1,456,807	-		Sama_1189	0.20	-0.4
1,456,829	+		Sama_1189	0.21	-2.2
1,456,830	-		Sama_1189	0.21	+0.1
1,456,918	+		Sama_1189	0.26	-0.5
1,456,927	+		Sama_1189	0.27	+0.1
1,456,927	+		Sama_1189	0.27	-2.3
1,456,928	-		Sama_1189	0.27	-1.5
1,456,928	-		Sama_1189	0.27	-1.1
1,456,928	-		Sama_1189	0.27	+0.2
1,456,936	+		Sama_1189	0.27	-1.1
1,456,937	-		Sama_1189	0.27	-0.9
1,456,937	-		Sama_1189	0.27	-0.7
1,456,959	+		Sama_1189	0.29	-0.1
1,456,960	-		Sama_1189	0.29	-0.4
1,456,992	+		Sama_1189	0.30	-1.9
1,456,992	+		Sama_1189	0.30	+0.3
1,456,993	-		Sama_1189	0.31	-0.4
1,456,993	-		Sama_1189	0.31	+1.0
1,457,108	+		Sama_1189	0.37	+0.4
1,457,108	+		Sama_1189	0.37	-0.9
1,457,173	+		Sama_1189	0.41	-1.7
1,457,173	+		Sama_1189	0.41	-1.0
1,457,173	+		Sama_1189	0.41	-1.0
1,457,173	+		Sama_1189	0.41	-0.5
1,457,174	-		Sama_1189	0.41	-0.6
1,457,174	-		Sama_1189	0.41	-2.2
1,457,174	-		Sama_1189	0.41	+0.2
1,457,175	+		Sama_1189	0.41	-0.4
1,457,175	+		Sama_1189	0.41	-0.2
1,457,175	+		Sama_1189	0.41	-0.3
1,457,243	+		Sama_1189	0.45	-0.7
1,457,244	-		Sama_1189	0.45	-0.2
1,457,244	-		Sama_1189	0.45	+0.9
1,457,245	+		Sama_1189	0.45	-1.2
1,457,245	+		Sama_1189	0.45	-1.2
1,457,246	-		Sama_1189	0.45	-1.7
1,457,246	-		Sama_1189	0.45	-0.4
1,457,246	-		Sama_1189	0.45	+0.4
1,457,476	+		Sama_1189	0.58	-1.9
1,457,477	-		Sama_1189	0.58	+0.1
1,457,526	+		Sama_1189	0.61	-1.3
1,457,526	+		Sama_1189	0.61	+1.1
1,457,526	+		Sama_1189	0.61	-0.9
1,457,526	+		Sama_1189	0.61	-2.3
1,457,526	+		Sama_1189	0.61	-0.7
1,457,526	+		Sama_1189	0.61	+0.2
1,457,526	+		Sama_1189	0.61	-1.2
1,457,526	+		Sama_1189	0.61	-1.2
1,457,526	+		Sama_1189	0.61	-0.9
1,457,526	+		Sama_1189	0.61	-1.0
1,457,526	+		Sama_1189	0.61	-0.7
1,457,526	+		Sama_1189	0.61	-0.1
1,457,527	-		Sama_1189	0.61	-0.6
1,457,527	-		Sama_1189	0.61	-0.9
1,457,527	-		Sama_1189	0.61	+1.5
1,457,527	-		Sama_1189	0.61	-0.9
1,457,528	+		Sama_1189	0.61	-0.2
1,457,528	+		Sama_1189	0.61	-2.4
1,457,528	+		Sama_1189	0.61	-1.2
1,457,528	+		Sama_1189	0.61	-1.3
1,457,528	+		Sama_1189	0.61	-1.1
1,457,528	+		Sama_1189	0.61	-1.2
1,457,528	+		Sama_1189	0.61	-0.5
1,457,529	-		Sama_1189	0.61	+0.0
1,457,529	-		Sama_1189	0.61	-3.3
1,457,529	-		Sama_1189	0.61	-1.2
1,457,566	+		Sama_1189	0.63	-1.2
1,457,566	+		Sama_1189	0.63	-0.8
1,457,566	+		Sama_1189	0.63	-0.9
1,457,581	+		Sama_1189	0.64	-0.2
1,457,581	+		Sama_1189	0.64	-0.3
1,457,581	+		Sama_1189	0.64	+0.0
1,457,581	+		Sama_1189	0.64	-0.2
1,457,581	+		Sama_1189	0.64	-0.3
1,457,582	-		Sama_1189	0.64	-1.3
1,457,582	-		Sama_1189	0.64	-1.1
1,457,582	-		Sama_1189	0.64	-0.3
1,457,582	-		Sama_1189	0.64	-0.6
1,457,582	-		Sama_1189	0.64	-1.3
1,457,583	+		Sama_1189	0.64	-0.4
1,457,583	+		Sama_1189	0.64	-1.1
1,457,583	+		Sama_1189	0.64	-0.3
1,457,583	+		Sama_1189	0.64	-0.0
1,457,584	-		Sama_1189	0.64	-0.0
1,457,584	-		Sama_1189	0.64	-1.6
1,457,601	+		Sama_1189	0.65	-0.4
1,457,602	-		Sama_1189	0.65	-0.3
1,457,616	+		Sama_1189	0.66	-0.5
1,457,616	+		Sama_1189	0.66	-0.5
1,457,616	+		Sama_1189	0.66	-1.1
1,457,800	+		Sama_1189	0.76	-0.8
1,457,818	+		Sama_1189	0.77	+1.2
1,457,818	+		Sama_1189	0.77	-0.6
1,457,867	+		Sama_1189	0.80	-1.0
1,457,867	+		Sama_1189	0.80	-1.6
1,457,867	+		Sama_1189	0.80	-0.1
1,457,867	+		Sama_1189	0.80	-1.2
1,457,867	+		Sama_1189	0.80	-0.9
1,457,867	+		Sama_1189	0.80	-0.6
1,457,867	+		Sama_1189	0.80	-0.2
1,457,867	+		Sama_1189	0.80	-0.0
1,457,868	-		Sama_1189	0.80	-0.3
1,457,868	-		Sama_1189	0.80	-0.7
1,457,868	-		Sama_1189	0.80	+0.4
1,457,903	+		Sama_1189	0.82	-0.8
1,457,907	+		Sama_1189	0.83	-0.7
1,457,907	+		Sama_1189	0.83	+0.8
1,457,907	+		Sama_1189	0.83	+0.2
1,457,907	+		Sama_1189	0.83	-1.9
1,457,907	+		Sama_1189	0.83	+0.2
1,457,908	-		Sama_1189	0.83	-0.2
1,457,908	-		Sama_1189	0.83	+1.0
1,457,956	+		Sama_1189	0.85	-1.2
1,458,002	+		Sama_1189	0.88	+0.8
1,458,002	+		Sama_1189	0.88	-0.4
1,458,003	-		Sama_1189	0.88	-2.8
1,458,003	-		Sama_1189	0.88	-0.1
1,458,057	+				-1.1
1,458,058	-				-0.6
1,458,059	+				+0.1
1,458,059	+				+0.9
1,458,059	+				+0.1
1,458,059	+				-1.3
1,458,059	+				+0.3
1,458,060	-				-1.2
1,458,060	-				+0.4
1,458,060	-				+0.2
1,458,060	-				-1.0
1,458,060	-				-0.4
1,458,060	-				-2.9
1,458,060	-				+0.6
1,458,089	+				-0.9
1,458,089	+				-0.3
1,458,089	+				+0.1
1,458,090	-				-1.3
1,458,097	+				-0.6
1,458,100	+				-0.3
1,458,100	+				+1.7
1,458,100	+				-0.6
1,458,100	+				-0.3
1,458,100	+				-0.5
1,458,100	+				-1.2
1,458,101	-				-0.5
1,458,101	-				-1.2
1,458,101	-				-1.6
1,458,110	+				-0.1
1,458,110	+				-1.9
1,458,111	-				+0.1
1,458,111	-				-1.9
1,458,130	-				-3.2
1,458,136	-				-1.2
1,458,136	-				-1.2
1,458,136	-				-0.3
1,458,312	-				-0.8
1,458,312	-				-0.7
1,458,327	+				+0.4
1,458,328	-				+1.6
1,458,332	-				+0.1
1,458,352	+				-0.5
1,458,353	-				-1.9
1,458,406	+		Sama_1190	0.12	-1.3
1,458,406	+		Sama_1190	0.12	-0.6
1,458,407	-		Sama_1190	0.12	-1.1
1,458,407	-		Sama_1190	0.12	-0.0
1,458,428	+		Sama_1190	0.18	+0.6
1,458,428	+		Sama_1190	0.18	-1.5
1,458,428	+		Sama_1190	0.18	-0.2
1,458,429	-		Sama_1190	0.18	-1.0
1,458,429	-		Sama_1190	0.18	-1.9
1,458,429	-		Sama_1190	0.18	+0.0
1,458,429	-		Sama_1190	0.18	-2.8
1,458,483	-		Sama_1190	0.32	-0.3
1,458,575	+		Sama_1190	0.56	+0.1
1,458,575	+		Sama_1190	0.56	-0.4
1,458,575	+		Sama_1190	0.56	-0.2
1,458,593	-		Sama_1190	0.61	-0.4
1,458,681	-		Sama_1190	0.84	-0.7
1,458,681	-		Sama_1190	0.84	-1.0
1,458,684	+		Sama_1190	0.85	-0.0
1,458,684	+		Sama_1190	0.85	-1.5
1,458,684	+		Sama_1190	0.85	+0.7
1,458,685	-		Sama_1190	0.85	-0.2
1,458,685	-		Sama_1190	0.85	-0.5
1,458,685	-		Sama_1190	0.85	+0.6
1,458,685	-		Sama_1190	0.85	+0.1
1,458,753	+				-0.3
1,458,755	+				+0.4
1,458,755	+				+0.0
1,458,755	+				+0.5
1,458,767	+				-0.3
1,458,768	-				+0.4
1,458,799	+				+1.7
1,458,831	+				+0.2
1,458,831	+				-0.9
1,458,831	+				-2.8
1,458,832	-				-1.2
1,458,844	+				+0.5
1,458,845	-				+2.4
1,458,845	-				-0.1
1,458,885	+				+0.4
1,458,885	+				+0.1
1,458,953	+		Sama_1191	0.15	+0.5
1,458,954	-		Sama_1191	0.15	-0.0
1,459,016	+		Sama_1191	0.24	-0.0
1,459,017	-		Sama_1191	0.24	+0.4
1,459,151	-		Sama_1191	0.43	+0.7
1,459,184	-		Sama_1191	0.48	-0.3