Strain Fitness in Shewanella oneidensis MR-1 around SO3751

Experiment: syringaldehyde 1 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	syringaldehyde 1 mM
3,897,730	+		SO_3750	0.33	-0.3
3,897,759	+		SO_3750	0.36	+0.1
3,897,767	-		SO_3750	0.36	-0.5
3,897,767	-		SO_3750	0.36	+0.5
3,897,767	-		SO_3750	0.36	+0.7
3,897,784	+		SO_3750	0.37	+0.4
3,897,784	+		SO_3750	0.37	+0.7
3,897,784	+		SO_3750	0.37	+0.2
3,897,784	+		SO_3750	0.37	-0.5
3,897,784	+		SO_3750	0.37	+0.5
3,897,784	+		SO_3750	0.37	+1.4
3,897,784	+		SO_3750	0.37	-0.2
3,897,784	+		SO_3750	0.37	+0.1
3,897,784	+		SO_3750	0.37	-0.1
3,897,784	+		SO_3750	0.37	-0.1
3,897,784	+		SO_3750	0.37	+0.8
3,897,784	+		SO_3750	0.37	+1.1
3,897,792	-		SO_3750	0.38	+0.3
3,897,792	-		SO_3750	0.38	-0.7
3,897,792	-		SO_3750	0.38	+0.8
3,897,792	-		SO_3750	0.38	+0.8
3,897,792	-		SO_3750	0.38	+0.1
3,897,792	-		SO_3750	0.38	+0.0
3,897,792	-		SO_3750	0.38	+1.4
3,897,792	-		SO_3750	0.38	-0.9
3,897,792	-		SO_3750	0.38	+0.2
3,897,792	-		SO_3750	0.38	-0.1
3,897,792	-		SO_3750	0.38	+0.1
3,897,792	-		SO_3750	0.38	-0.0
3,897,792	-		SO_3750	0.38	+0.8
3,897,841	+		SO_3750	0.41	-0.2
3,897,871	-		SO_3750	0.44	+0.3
3,898,151	+		SO_3750	0.64	+0.6
3,898,180	+		SO_3750	0.66	-0.5
3,898,207	+		SO_3750	0.68	-0.1
3,898,389	-		SO_3750	0.81	+1.8
3,898,401	+		SO_3750	0.82	+0.6
3,898,404	-		SO_3750	0.82	+0.8
3,898,556	-				-0.2
3,898,556	-				+0.3
3,898,556	-				-0.1
3,898,621	-				+0.8
3,898,692	+				-1.1
3,898,766	+		SO3751	0.12	+1.3
3,898,769	-		SO3751	0.12	+0.6
3,898,858	+		SO3751	0.20	+1.8
3,898,916	-		SO3751	0.26	-0.3
3,898,924	+		SO3751	0.27	+0.3
3,898,941	-		SO3751	0.28	-1.5
3,899,027	+		SO3751	0.37	-1.2
3,899,027	+		SO3751	0.37	-0.1
3,899,027	+		SO3751	0.37	+0.1
3,899,027	+		SO3751	0.37	+0.5
3,899,027	+		SO3751	0.37	-0.0
3,899,040	-		SO3751	0.38	-0.4
3,899,040	-		SO3751	0.38	-0.6
3,899,080	+		SO3751	0.42	-0.7
3,899,090	+		SO3751	0.43	-0.1
3,899,090	+		SO3751	0.43	+0.1
3,899,090	+		SO3751	0.43	+0.2
3,899,090	+		SO3751	0.43	-0.1
3,899,090	+		SO3751	0.43	-0.3
3,899,098	-		SO3751	0.43	+0.6
3,899,098	-		SO3751	0.43	+0.0
3,899,098	-		SO3751	0.43	-0.1
3,899,098	-		SO3751	0.43	-0.1
3,899,098	-		SO3751	0.43	-0.7
3,899,098	-		SO3751	0.43	-0.2
3,899,109	-		SO3751	0.44	-1.4
3,899,353	-		SO3751	0.68	+0.2
3,899,447	+		SO3751	0.77	-0.0
3,899,447	+		SO3751	0.77	-0.0
3,899,447	+		SO3751	0.77	-0.6
3,899,447	+		SO3751	0.77	-0.5
3,899,455	-		SO3751	0.78	+1.7
3,899,455	-		SO3751	0.78	-0.1
3,899,455	-		SO3751	0.78	+0.0
3,899,455	-		SO3751	0.78	-0.4
3,899,455	-		SO3751	0.78	+0.2
3,899,455	-		SO3751	0.78	-2.7
3,899,455	-		SO3751	0.78	-0.3
3,899,455	-		SO3751	0.78	+0.2
3,899,455	-		SO3751	0.78	+1.0
3,899,455	-		SO3751	0.78	-0.2
3,899,455	-		SO3751	0.78	-0.7
3,899,460	-		SO3751	0.78	-0.4
3,899,485	+		SO3751	0.80	-2.6
3,899,493	-		SO3751	0.81	-0.2
3,899,493	-		SO3751	0.81	+1.6
3,899,493	-		SO3751	0.81	+0.3
3,899,500	+		SO3751	0.82	-1.3
3,899,500	-		SO3751	0.82	-0.1
3,899,502	+		SO3751	0.82	-0.2
3,899,502	+		SO3751	0.82	+0.1
3,899,502	+		SO3751	0.82	+0.3
3,899,502	+		SO3751	0.82	-0.0
3,899,530	+		SO3751	0.85	-0.1
3,899,570	-		SO3751	0.89	-0.5
3,899,585	-				+0.1